PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9D2L2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 416aa    MW: 47132 Da    PI: 10.2371
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9D2L2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.6e-2261151190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY +Y++  GF +rksk  k+   gei++++fvC+++g+r+++  +  +++r++++  r+gC a++++kk++ + kw v+++ ++Hn +l 
  Araip.9D2L2  61 EFYTSYSRLKGFAIRKSKRVKN-ARGEIVRYNFVCNRQGFRHKKWLDkLDRKREHKPIMRCGCVAEMRIKKNHtNRKWFVSQFMEDHNYTLL 151
                  6****************99998.7777**************99976646899999******************9**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-2061151IPR004330FAR1 DNA binding domain
Gene3DG3DSA:4.10.60.105.7E-4343363IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MNNMNHESIS TSTNRESAML DPEDGLLNET DIEPQSAQVP SHVNIEDVLK MEFCTPGEAR  60
EFYTSYSRLK GFAIRKSKRV KNARGEIVRY NFVCNRQGFR HKKWLDKLDR KREHKPIMRC  120
GCVAEMRIKK NHTNRKWFVS QFMEDHNYTL LSKRFIGYLP SHRNMSDVEI AQMNSMRQVG  180
ISIPKIYQSF AMQVGGFNLV RFTKQDMHNE VRKQLQVGID IGSLPETLVL KRWCKNVKNN  240
VTSVRQVTET GDVASRYRSR LGAFVDQCKR FAKVACLRDE DYKVFSKKMA RDAIMLEVKN  300
GLRVAPDVNP QLNGDGGGGI NDLVCVRTKG TGRGNDSHVT KGPKKRKCSA CRKLGHRQTR  360
CPSAPAPRQG CCGSLPVLEG CQAQPQTTPS QTTRQENSTF FASELATSYV SANIVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340346KGPKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9D2L2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025678190.11e-132protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444X0Y91e-145A0A444X0Y9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.14e-18FAR1-related sequence 10