PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8V58J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 339aa    MW: 37245.3 Da    PI: 4.9503
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8V58JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36291202102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
   Araip.8V58J  29 FLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCEIQ 116
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Araip.8V58J 117 RRKI 120
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-5725118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.97E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTPPPPTPVD TSDSPATGGE SQRSIPTPFL TKTYQLVEDQ SIDDVISWND DGSTFIVWNP  60
TVFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRRGEKR LLCEIQRRKI  120
STPSPSPSPT AAGIATATVA VPSPMPLTAI PTAMPIISPS NSGDEQVISS SSSPSRAPAE  180
LLDENERLRK ENVQLTKELA EMRSLCNNIF SLMSNYATTN AATTTTTNNS NSNQINGSAQ  240
GSRDSAFTAV RPLDLMPVKR SSSGEPWTET ATAMMVEEMN PGSGGGGEGE EDTLLRLHQP  300
GYADVKSEPL DCQNHRDNSS NQETPWLNQC HRANQRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241311813129Heat shock factor protein 1
5d5v_B2e-241311813129Heat shock factor protein 1
5d5v_D2e-241311813129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8V58J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204226.10.0heat stress transcription factor B-2b
SwissprotQ6Z9C82e-85HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A445CZB60.0A0A445CZB6_ARAHY; Uncharacterized protein
STRINGXP_007152318.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-77heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]