PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8T0TC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 348aa    MW: 37952.6 Da    PI: 6.1092
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8T0TCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17259292134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Araip.8T0TC 259 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 292
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-751340IPR016679Transcription factor, GATA, plant
SMARTSM004012.8E-16253303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.846253289IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15256316No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14257290IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.11E-14258315No hitNo description
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15259292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MIEPNFVDDV DCGSFFDHID DLLDFPADDA ATADASLPVA AACAGNIETP ASFWSSESNS  60
GLPATDTAFP RRDAVTDLSA EISVPYEDIV QLEWLSTFVE DSFSGRSLTM KKVELPTTTT  120
TIKEDLTRSQ FRTSSPVSVL ESSSSCSREK VVAQCPEIYI PVVPCGRARS KRQRPSSFKA  180
HPVMQLISPA SSVGENTQPN VILKASSDSE NFAESHPGIK LAKQASGEHK KKKKTKAPNP  240
LTEDDDHDTN QNSAAARKCM HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA  300
ASPTFCPAVH SNSHKKVLEM RNKFGFSTDS DASPELIPNT SRLGLEYM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8T0TC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150447e-69AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204506.10.0GATA transcription factor 8 isoform X1
RefseqXP_016204507.10.0GATA transcription factor 8 isoform X2
RefseqXP_025657178.10.0GATA transcription factor 8 isoform X1
RefseqXP_025657179.10.0GATA transcription factor 8 isoform X2
TrEMBLA0A444XBI90.0A0A444XBI9_ARAHY; GATA transcription factor
STRINGGLYMA02G08145.21e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-43GATA family protein