PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.82RL7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 331aa MW: 37815 Da PI: 8.1261 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55.1 | 2e-17 | 67 | 161 | 2 | 75 |
trihelix 2 WtkqevlaLiearr.emeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 Wt qe+l Li+a++ ++e+rl++++ + + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k +s++ Araip.82RL7 67 WTIQETLILITAKKlDDERRLKTASsssssssaspacsttptsrsSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYESKSQSQQ 161 *************9544444554435566777888888888888899******************************************965443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-5 | 58 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.446 | 59 | 144 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.3E-12 | 66 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSDPPTTPLA PPPIIPSQPH HPHHHHHHHH PPPHLPLIHH STATPPPPSP SPSSSTSLAR 60 EYRKGNWTIQ ETLILITAKK LDDERRLKTA SSSSSSSSAS PACSTTPTSR SSGELRWKWV 120 ENYCWSHGCL RSQNQCNDKW DNLLRDYKKV RDYESKSQSQ QPNYDDNKDL LPSYWTLNKQ 180 QRKEHNLPSN MVFEVYQAIC EYNHADQCVR GYHLMIVMDF VGWRSESSSG TEEDSDNDDD 240 GSESKRRKVK NLGSSIMHSA SVLARALRSC EEKKEKRHRE MMELEQRRIQ MEEARNEVQR 300 QGIATIVAAV TNLSGAIQSL INNNPERHGQ R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.82RL7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006423 | 4e-33 | AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229739.1 | 1e-128 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A151SE87 | 1e-126 | A0A151SE87_CAJCA; Uncharacterized protein | ||||
STRING | XP_007143775.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6804 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 2e-40 | Trihelix family protein |