PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.788L8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 39852.7 Da PI: 6.4004 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd ++v v ++G+ +W++++++ g++R++k+c+ rw +yl Araip.788L8 14 RGVWSPEEDAKIVAFVSKHGPSNWTSVPKKAGLKRCGKSCRFRWTNYL 61 899*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 41 | 4.4e-13 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T +E++l++++++ G++ W Ia+ ++ gRt++++k++w++ Araip.788L8 69 TFTSQEEDLIIKLHAAIGSR-WFIIAQQLP-GRTDNDVKNYWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.26 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-10 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.918 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.71E-8 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 7.2E-12 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MVRSQCYDKI SVKRGVWSPE EDAKIVAFVS KHGPSNWTSV PKKAGLKRCG KSCRFRWTNY 60 LRPDLKQDTF TSQEEDLIIK LHAAIGSRWF IIAQQLPGRT DNDVKNYWNT KLKKKLSQMG 120 IDPVTHKPFS KLIADYGNIE GSHSQKPTNQ TSFINNKDLK RSSILLNAEP YQTLKPQGVI 180 SRITNNNNSQ QQTLQMEPIT DKTNLSFNSL TDLTMMPTVI GSTDCCIETE NETITCSSSS 240 SCSTPDQDAS PVASHFRWND FLLEDAFVPT ADNNDQEMVK AGFLSKELLV CRIENVSRQS 300 WNNKEAISND FQLSSSSSSS SSYETSFVEA MLDQENEMFL NFPHLMEEPS HY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-27 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.788L8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016199942.1 | 0.0 | transcription factor MYB35-like | ||||
Refseq | XP_025650939.1 | 0.0 | transcription factor MYB35-like | ||||
TrEMBL | A0A444Z2U0 | 0.0 | A0A444Z2U0_ARAHY; Uncharacterized protein | ||||
STRING | XP_004513209.1 | 1e-110 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-65 | MYB family protein |