PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.761TD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 121aa    MW: 13676.1 Da    PI: 9.7914
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.761TDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-3262119259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYG+K+vk+s++pr+YYrCt  gC+vkk+ver++edp++v++tYeg+H+h+
  Araip.761TD  62 DDGYRWRKYGKKMVKNSPNPRNYYRCTVDGCRVKKRVERDREDPTYVITTYEGNHTHP 119
                  8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-3447119IPR003657WRKY domain
SuperFamilySSF1182907.45E-2954120IPR003657WRKY domain
PROSITE profilePS5081130.85956121IPR003657WRKY domain
SMARTSM007742.8E-3661120IPR003657WRKY domain
PfamPF031061.3E-2562119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MSSDKNKKAA DSPENVGDFG ASGSGSNHLQ GSSNAREVSG SEKKDVRERV AFKTKSEVEI  60
IDDGYRWRKY GKKMVKNSPN PRNYYRCTVD GCRVKKRVER DREDPTYVIT TYEGNHTHPT  120
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2651118774Probable WRKY transcription factor 4
2lex_A2e-2651118774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.761TD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165754.11e-75probable WRKY transcription factor 50
RefseqXP_025667266.12e-75probable WRKY transcription factor 50
SwissprotQ8VWQ52e-40WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A445C8Q91e-60A0A445C8Q9_ARAHY; Uncharacterized protein
STRINGGLYMA17G34210.21e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-43WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]