PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6UE4Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 499aa    MW: 52065.3 Da    PI: 8.1386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6UE4ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-051941123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Araip.6UE4Z 19 FVCEICNKGFQRDQNLQLHRRGH 41
                 89*******************88 PP
2zf-C2H211.20.001195117123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Araip.6UE4Z  95 WKCDKCSKKYAVQSDWKAHSKIC 117
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.75E-71841No hitNo description
Gene3DG3DSA:3.30.160.601.6E-51841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9491941IPR007087Zinc finger, C2H2
PfamPF121717.9E-51941IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0171941IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SMARTSM003551906090IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-483116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.75E-790115No hitNo description
SMARTSM0035515095115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY  60
VCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR  120
EYKCDCGTLF SRRDSFITHR AFCDALAEES ARSQTHSQTT QSQIGVKVSS ESDSKAVNAE  180
SSSPQATPPP PAPTPAPAPP PPPPPPVQPE APPLPATTTT TTTTQPNSVV VPLVLQTQNP  240
ELPENSPQII EEPQANTALN GSCSSSTSST SNGGTSSSVF ASLFASSTAS GNLQSQTPPA  300
FTDLVRAMGP HDHPTDLPGP SSSEPISLCL ATNHGSSIFG TGGQDRRQYA PPPQPTMSAT  360
ALLQKAAQMG AAATNASLLR GLGIVSSSAS SSPAQQDGLQ WGQQPAEPES ASVPAGLGLG  420
LSFDSGSGLK ELMMGTPSMF GPKHTTLDFL GLGMAAGGTP GGGLSALITS IGGGLDVSAA  480
AAASFGNGEF SGKDIGRST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3591157369Zinc finger protein JACKDAW
5b3h_F3e-3591157369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6UE4Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-122AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025653096.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X1
SwissprotQ9LVQ71e-162IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A444Z9X70.0A0A444Z9X7_ARAHY; Uncharacterized protein
STRINGGLYMA01G38290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]