PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.60UY0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 114aa MW: 12984.9 Da PI: 10.323 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 2.9e-10 | 57 | 97 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P K++ +++Le+A++Y+k L Araip.60UY0 57 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIHYVKFL 97 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.154 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-14 | 53 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-12 | 54 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-12 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.69E-11 | 54 | 101 | No hit | No description |
Pfam | PF00010 | 9.1E-8 | 57 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 114 aa Download sequence Send to blast |
MDCIDPSGNT ITCASIEEQG SSSNPNNKRK KGNAMNNNKR KNKGVMKLST DPQSVAARER 60 RHRISDRFKI LQSMVPGGSK MDTVSMLEEA IHYVKFLKAQ IWLHQTLMMN YDHF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.60UY0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 4e-49 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016186615.1 | 7e-80 | transcription factor bHLH140 | ||||
Refseq | XP_025635380.1 | 7e-80 | transcription factor bHLH140 | ||||
Swissprot | Q7XAQ6 | 5e-33 | LAX1_ORYSJ; Transcription factor LAX PANICLE 1 | ||||
Swissprot | Q9M041 | 5e-32 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | A0A445EA66 | 6e-78 | A0A445EA66_ARAHY; Uncharacterized protein | ||||
STRING | XP_010092808.1 | 9e-43 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7167 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01310.1 | 2e-34 | APRATAXIN-like |