PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.572XZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23221.5 Da PI: 9.3174 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.9 | 1.1e-22 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i++ Araip.572XZ 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVM 48 8************************************97 PP | |||||||
2 | K-box | 72.4 | 1.3e-24 | 67 | 147 | 12 | 92 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 + a++ ++e+a L+++++ Lq+ +R+l+Ge+L+ L ++eLq+Le+qLe slk +R kK+++++++i+el +k e++++n Araip.572XZ 67 NPASEVKREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNG 147 4467899******************************************************************99999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.27E-23 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.38 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.94E-33 | 2 | 62 | No hit | No description |
PRINTS | PR00404 | 1.6E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-20 | 10 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.524 | 69 | 185 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.1E-22 | 70 | 146 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIVMKS IIERYNKLKE 60 EHNQLMNPAS EVKREAASLR QQLQHLQECH RKLMGEELSG LGVQELQNLE NQLEMSLKGV 120 RMKKDQIFTD EIKELHQKVY EARSTNGENA ASNPPYTIGN GYDLLAPISL QLSQPETQYT 180 EPPAKAMKLG TDNYKEGANI LNQTQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.572XZ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016179715.1 | 1e-126 | MADS-box transcription factor 23 | ||||
Refseq | XP_025681009.1 | 1e-126 | MADS-box transcription factor 23 isoform X2 | ||||
Swissprot | Q9SZJ6 | 7e-62 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A444WXN0 | 1e-131 | A0A444WXN0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G32810.1 | 1e-100 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 3e-64 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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