PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.54I3D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 88aa MW: 10090.1 Da PI: 4.4189 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.4 | 2.3e-08 | 51 | 87 | 1 | 39 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs+e Araip.54I3D 51 KFYRNYAKAAGFSTRVRSTNRK--ENEIKNQLITCSREK 87 6****************98887..7779********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-5 | 51 | 87 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MDDSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDQFVPKVG MTFTTLEDAE KFYRNYAKAA 60 GFSTRVRSTN RKENEIKNQL ITCSREKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.54I3D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 2e-75 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020981425.1 | 3e-50 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444XXF5 | 5e-56 | A0A444XXF5_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 3e-07 | FAR1-related sequence 10 |