PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4A18K
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 397aa    MW: 45324.6 Da    PI: 4.7916
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4A18KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.5e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws++++sfvv+++ efa+ +Lpk+Fkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +g+ +l+++i+
   Araip.4A18K  14 FLTKTYEMVDDPSTNSIVSWSDSSRSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFSNDDFVRGQPNLMKNIH 101
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Araip.4A18K 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.22E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDEVQGSSSS LPPFLTKTYE MVDDPSTNSI VSWSDSSRSF VVWNPPEFAR VLLPKFFKHN  60
NFSSFIRQLN TYGFKKIDPE QWEFSNDDFV RGQPNLMKNI HRRKPVHSHS LQTLHGQVAI  120
PLTESERKSL KDDIEKLKHD KQEQILELQR QEQEWEIFKL KIDCTKERLE TMEKRQQNMI  180
SSISQVLHKP GAALNLLTLT ENMERKRRLP KGSSHFTDEA SIEDPMEISQ VLPSENAESS  240
GFVTSCIERM NQLESTLVFW EYIAQDVNET IVQSHSNLDV DESTSCPDSP AVSSVQLDDE  300
VQPKSSGIDM NSEPALPSDT VALKEQPVGT TPAATGVNDK FWEQFLTENP GSTELQEAQS  360
ERMDLDNKKN EGKPSAHGKF WWNMRNVNNL PEQMGHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-24910324129Heat shock factor protein 1
5d5v_B4e-24910324129Heat shock factor protein 1
5d5v_D4e-24910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4A18K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181813.10.0heat stress transcription factor A-4c
RefseqXP_016181814.10.0heat stress transcription factor A-4c
RefseqXP_025682749.10.0heat stress transcription factor A-4c
RefseqXP_025682750.10.0heat stress transcription factor A-4c
SwissprotO494031e-118HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A444WX580.0A0A444WX58_ARAHY; Uncharacterized protein
STRINGGLYMA05G29470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-115heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]