PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.482II
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 579aa    MW: 64103.1 Da    PI: 5.654
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.482IIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.43.8e-1122085793374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++L+e+A  +s+ +  +a++ L++l++ +s++g+p+qR+ +yf+eAL ++l+    +    a+   +++ ++s+e +  +k++++++P+ kf+hltaN
  Araip.482II 208 KALTEFAL-LSETEPDQASESLSQLRKSVSQNGNPIQRVSFYFAEALTRKLTFeREKDKNLAMVEAASTATTSEELTLCYKALNDACPYSKFAHLTAN 304
                  66777776.66778999**********************************983333444445566666677999999******************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+eg++r+Hi+Df+i qG+QW+aLlqa+a+R++g+p s+Ri g+ +++ g   + +l++tg+rL++fA+ l+++fef++ + + +++l+ +++
  Araip.482II 305 QAILEATEGASRIHIVDFGIVQGIQWAALLQAFATRSSGKPeSIRISGIPAMALGtsPAASLSATGNRLSEFAKLLELNFEFRP-ILTPIHELNESSF 401
                  *************************************77776*********99889999*************************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   v+p+EalaVn++lql++llde+ +  +   + L+l ksl+Pk+v++ e ea+++++ F++rf +al+yys++f+sle +++++s er+ vEr+l+gr
  Araip.482II 402 CVDPNEALAVNFMLQLYNLLDETPDAVE---AALRLAKSLRPKIVTLGEYEASLTRGGFMNRFKNALRYYSSVFESLEPNMAPDSPERMQVERHLFGR 496
                  ********************99999998...9****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i+ vv   g+  rer+e +e+Wr  +e++GF++v+ls++a +qak ll +++ s  y++ e++ +++ l Wkd pL++vS+Wr
  Araip.482II 497 RISGVVGLPGTV-RERMEDKEQWRVFMESCGFESVSLSHYAISQAKILLWNYSySSLYSLVESKPEFLsLAWKDVPLLTVSSWR 579
                  ***********9.9***************************************9999******999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.294180557IPR005202Transcription factor GRAS
PfamPF035141.3E-109208579IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEEGVWELGV GPRGMVSTVF RKTFNQVVVL DSGNLMAIAQ QVIKQKQQQE QQQHNHHSHN  60
HHHHHQQQQQ QNQQHLLGIN PLSLHPWNNT PPLGFPLTPT NDFPDPFQVG SGPDNPDPAF  120
HFPPPLEPHS SSSFRFSDFA AATFDSDEWM DTLMATAAGD STDTSTIPAA AAAWHNASSP  180
PAPPQAPATV QGGFSSLPEP DSSHPLLKAL TEFALLSETE PDQASESLSQ LRKSVSQNGN  240
PIQRVSFYFA EALTRKLTFE REKDKNLAMV EAASTATTSE ELTLCYKALN DACPYSKFAH  300
LTANQAILEA TEGASRIHIV DFGIVQGIQW AALLQAFATR SSGKPESIRI SGIPAMALGT  360
SPAASLSATG NRLSEFAKLL ELNFEFRPIL TPIHELNESS FCVDPNEALA VNFMLQLYNL  420
LDETPDAVEA ALRLAKSLRP KIVTLGEYEA SLTRGGFMNR FKNALRYYSS VFESLEPNMA  480
PDSPERMQVE RHLFGRRISG VVGLPGTVRE RMEDKEQWRV FMESCGFESV SLSHYAISQA  540
KILLWNYSYS SLYSLVESKP EFLSLAWKDV PLLTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462035791375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.482II
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187826.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A445A7920.0A0A445A792_ARAHY; Uncharacterized protein
STRINGXP_004505608.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-160GRAS family protein