PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.45IG7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 371aa MW: 41581.6 Da PI: 8.7337 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 8.8e-32 | 154 | 207 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Araip.45IG7 154 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 207 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-15 | 151 | 208 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-28 | 152 | 208 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-23 | 154 | 207 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 155 | 206 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MLTNSLPSIM QTLLASSPPK FQGPDLSLNI SPPCVGVSDS ENNNNLNNNN MNMNMFLSSR 60 KKILYNDIST SSTTSDSGGS SCGSASDLSH ENNNLNLLHH EPTLTLDLNN YHHHHQGLSR 120 SFNNHHHFQP QIYGREFKRS SRVINGVKRS VRAPRMRWTT TLHAHFVHAV QLLGGHERAT 180 PKSVLELMNV KDLTLAHVKS HLQMYRTVKS TDKSTGHGQT DMGLIPMPRI NNVAHLHANN 240 GVSASHDDRP NNLPHPPQNY SQRSWQSSIM EANTNNSRQK PQIGLTDSHT KGYETMVEEH 300 NCGGMSNCMK ENKLDSTPLS SSDELMLDLE FTLGRPNWEK EHQKESSRVE LTLLKCSINL 360 TNHLISLSLK K |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 155 | 209 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00107 | PBM | Transfer from AT5G42630 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.45IG7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016163164.1 | 0.0 | probable transcription factor KAN4 | ||||
TrEMBL | A0A151R6J5 | 1e-116 | A0A151R6J5_CAJCA; Putative Myb family transcription factor At1g14600 family | ||||
STRING | GLYMA17G36500.1 | 1e-116 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4463 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42630.1 | 2e-56 | G2-like family protein |