PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.44RH2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 550aa    MW: 59783 Da    PI: 7.6486
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.44RH2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-093453821954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Araip.44RH2 345 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 382
                  664459******************************88 PP
2BELL80.91.7e-262282792172
         BELL  21 krYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  k+ kqy++q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Araip.44RH2 228 KKAKQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 279
                  5669***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-44155277IPR006563POX domain
PfamPF075267.8E-31160276IPR006563POX domain
PROSITE profilePS5007112.195323386IPR001356Homeobox domain
CDDcd000865.16E-12326387No hitNo description
SMARTSM003895.3E-9326390IPR001356Homeobox domain
SuperFamilySSF466894.71E-17327393IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-29329392IPR009057Homeodomain-like
PfamPF059202.1E-18343382IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MATYFHGNSE IQGGGVDGGL QTLVLMNPGY IQFSDTPPPP PPHGGNLMLL NSLAAAGNSS  60
LAPHAPLSQQ FLGVPLAAEH MQGHHDVSVA LHGYAPRGHY NLWNTIDPTT AARDATRATQ  120
GLSLSLPAMS GDDVRVSGGS PSSASGVTNG GGGVSGIQSV LLNSKYLRAT QELLEEVVNV  180
NNNNDAKVGV GESSSNGGNS GGDGSVGEGS EKRCAELSAT ERQEIQMKKA KQYHNQMQIV  240
ISSFEQAAGI GSARTYTALA LQTISKQFRC LKDAITGQIK AANKSLGEED YFGGGKIEGS  300
RLKYVDHHLR QQRAIQQLGM MHHNAWRPQR GLPERSVSVL RAWLFEHFLH PYPKDSDKHM  360
LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEMKDHD MNNSNNNNVS EDNKSSKSNE  420
DPNNAKNSPP RDSNSESDTK KSFNSKQENN VSISTPTSQI GGNSRNNNNN NSSGFSFMGS  480
SELLDGITQG SSPKKPRSNE INIQLGRRLD HMSGEQHSNE FGAVNNTQNP HHSSAAFQSM  540
QNSKRWDWLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16332390563Homeobox protein Meis2
3k2a_B3e-16332390563Homeobox protein Meis2
4xrs_A2e-16332389158Homeobox protein Meis1
4xrs_B2e-16332389158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.44RH2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184687.10.0BEL1-like homeodomain protein 1
RefseqXP_016184689.10.0BEL1-like homeodomain protein 1
RefseqXP_020972324.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-132BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLV7D1A00.0V7D1A0_PHAVU; Uncharacterized protein
STRINGXP_007162972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-112BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]