PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.37U9J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 394aa    MW: 45188.1 Da    PI: 7.4734
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.37U9JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.72.2e-1965158189
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  +fYne+++  GFs+r+sk  +      +g i+++ fvCs++g+r+ ++ + + ++  +r++tr+gC+a++kv  ++ +g+w+v+ ++ eHn ++
  Araip.37U9J  65 DFYNEFGRIKGFSIRRSKVGRCkkaGSEGDIIWQIFVCSRQGERDAKHVHrNGRKMDPRPVTRCGCNARIKVYVDSrNGRWYVEFFSDEHNQDM 158
                  6***************98766622256789**************9998874567778*****************999**************776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1765158IPR004330FAR1 DNA binding domain
Gene3DG3DSA:4.10.60.108.5E-5336354IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.488341354IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEGTEEDNLV ASTMYCYGNG LFQADDQRDV IILDGIGLFG AIDFDALRAE EIMMIEFVHL  60
KTTYDFYNEF GRIKGFSIRR SKVGRCKKAG SEGDIIWQIF VCSRQGERDA KHVHRNGRKM  120
DPRPVTRCGC NARIKVYVDS RNGRWYVEFF SDEHNQDMLE ARFRGMMRGG FEMVGLEVKD  180
IYNAIEKQRR AGASDTDNAL KYLQMLKSRD PSSNVRVVSS KKTSMFTLFE VAMYCQVLYW  240
VVGQRRQNKP PINNHVFSGE IPDAAYMSMH VAMLNDYSEL VKLSCSYFED YFKVKTKIAN  300
EQDALREKIR KRLATTAEGG GDDVSIHDMT TRGRYRRVQY CRKCGKAGHN ARRCIDGNGD  360
DTTHELDALG SSHNMDESQE AEASQPMEYD SLRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.37U9J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025702767.11e-114protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZXR40.0A0A444ZXR4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-10FAR1 family protein