PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.32MBN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 541aa    MW: 62788.3 Da    PI: 6.6113
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.32MBNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.43.6e-2168159190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  ++Y ++A++ GFsvrk++s+ s + g i+kr+fvC+++g++  ++k + +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  Araip.32MBN  68 EYYGNFARKNGFSVRKERSRVSPQLG-IYKRDFVCYRSGFAPVKRKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNIHNHELL 159
                  59********************8888.*****************9999**********************99877789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1968159IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.014413448IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-8420447IPR007527Zinc finger, SWIM-type
SMARTSM005757.3E-6423450IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MTSIPSKNLW IRRQQCPCGD WKCYITYEGD SDEGSRAEEL VKAEKASSGA MITPYVGMVF  60
KSDDEAFEYY GNFARKNGFS VRKERSRVSP QLGIYKRDFV CYRSGFAPVK RKPNGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNIHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKMLEL EKGIQGGQLP YLERDVRNFV QNRKKVVQEN EALLSEKREN  240
DLSELLEACK AMKEVDVDFV YDFTVDENDK WRDMISVFGF GSDKHIGLLY SVRASWAQSY  300
VRGYFLARMS TIAYSKSIDA FLKGIFAAQT CLRSFFEQIG ISANIQHQAH QETHYMHLKT  360
CIPVEEHARS ILTPFAFNAL QQELLLAMQY AASEMANGSY IVRHFKSMDG ERLVIWLAED  420
EQIHCSCKEF ESSGILCRHA LRVFILKNYF QLPDKYYLSR WRRECTLLID DDHNNQITDG  480
EWFQEYQSLA ETLFSESSIT KERSDYARSE LTKELTRILN EVRNLPDTDE VLMNMTVSPT  540
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.32MBN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028943522.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X2
SwissprotQ9LKR41e-124FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0B0N6E80.0A0A0B0N6E8_GOSAR; Far1-related sequence 10-like protein
STRINGPOPTR_0016s00900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-119FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]