PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.2T5BL

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 611aa MW: 70439.3 Da PI: 8.7153

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.2T5BL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.9	3.8e-19	81	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++YA+ GF r +++ + ng+ +r++vC++eg+r+++ + ++k+r +r+ tr+ C+a+++ + + kw+vt +e+ HnH+l Araip.2T5BL 81 QFYKNYANVHGFVARCDEKGYD-FNGNLNMRQMVCNREGTRRKKYLEmENKKRDHRPITRVMCQARIRFHYDMkLRKWKVTAFEETHNHDLI 171 6************9998887.9999***********998886788889************998799************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-16	81	172	IPR004330	FAR1 DNA binding domain
SuperFamily	SSF57756	1.07E-5	374	405	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	1.1E-4	378	409	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MGSVHKNSTK SSIEFDDLSF EYSGSSEEND INISQKKGTI DEAMKMVNRG DGFGEVEKKL 60 TELTKDDIWG IEHDSVEQCV QFYKNYANVH GFVARCDEKG YDFNGNLNMR QMVCNREGTR 120 RKKYLEMENK KRDHRPITRV MCQARIRFHY DMKLRKWKVT AFEETHNHDL IPPKYIQFVP 180 AYRAVRQYRT NELLSDFKSL FSSPVLTTCF EDIEKEAANI FTHNMFKEVR NEILEASKLN 240 VVGHSNNGNK IEVRMNKYQE PAIEYKVRHD HISIIPNTLI HKRWTKDPKK EYISSLTAED 300 IESEKIAGVR YGALATLCFT LCDKASKHRD DFMEIREAIF GLIMKLHKRH NPNEKLPSTA 360 NLVGDPSVVK TKGAPRQTTK TAKARTCSHC KQIGHTVRRC PKLYGGECSL SLNEEKLNTD 420 NDQSSTESNG VTDMSDEETI HQCNEKRSDL FENIQKKVNK PLVQSTEVQS NYYNDNRTEK 480 PSAQTKINAP EAAFEDTKND RISSVQKSNK RKRLDNNRIE KSRKPNKEDH QEVSTEIGTY 540 GAISSTKGFE NFQYMSGLPI YPSFNGYPMP PCYSYSGGGT PMFQINPSHA NVPNYYDYWN 600 ARVQDFNKKK I

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MGSVHKNSTK SSIEFDDLSF EYSGSSEEND INISQKKGTI DEAMKMVNRG DGFGEVEKKL  60
TELTKDDIWG IEHDSVEQCV QFYKNYANVH GFVARCDEKG YDFNGNLNMR QMVCNREGTR  120
RKKYLEMENK KRDHRPITRV MCQARIRFHY DMKLRKWKVT AFEETHNHDL IPPKYIQFVP  180
AYRAVRQYRT NELLSDFKSL FSSPVLTTCF EDIEKEAANI FTHNMFKEVR NEILEASKLN  240
VVGHSNNGNK IEVRMNKYQE PAIEYKVRHD HISIIPNTLI HKRWTKDPKK EYISSLTAED  300
IESEKIAGVR YGALATLCFT LCDKASKHRD DFMEIREAIF GLIMKLHKRH NPNEKLPSTA  360
NLVGDPSVVK TKGAPRQTTK TAKARTCSHC KQIGHTVRRC PKLYGGECSL SLNEEKLNTD  420
NDQSSTESNG VTDMSDEETI HQCNEKRSDL FENIQKKVNK PLVQSTEVQS NYYNDNRTEK  480
PSAQTKINAP EAAFEDTKND RISSVQKSNK RKRLDNNRIE KSRKPNKEDH QEVSTEIGTY  540
GAISSTKGFE NFQYMSGLPI YPSFNGYPMP PCYSYSGGGT PMFQINPSHA NVPNYYDYWN  600
ARVQDFNKKK I

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.2T5BL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025652196.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025670515.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445EE92	0.0	A0A445EE92_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF29336	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-12	FAR1-related sequence 11