PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2QF0G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 611aa    MW: 68813.3 Da    PI: 8.114
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2QF0GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.75.2e-20116205190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY++YA   GF vr ++ ++   +g++++r+ vC++ g+r+e  kk+e+ r +r+ tr  C a+++ ++++  ++w+v ++ +eH Hel+
  Araip.2QF0G 116 RFYKTYAMIHGFAVRLDEVRRD-SDGSVIMRQIVCNRAGSRKEVVKKDERIRDHRPLTRSCCPARIRARLDTkIQQWKVVSFYEEHPHELV 205
                  5****************99998.8999********************9***********************989***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-17116205IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.592346384IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
QKLNAPQPHS SLKLKEKGNQ ALPTHLPSPA ARSTAATPTT VATSILVYLR FWEMDPSDSD  60
FFGSDSDVGF PRGDDLDFLD DDSEADEDRP QDKRTAELSR EDIMQLQFTD EEAVYRFYKT  120
YAMIHGFAVR LDEVRRDSDG SVIMRQIVCN RAGSRKEVVK KDERIRDHRP LTRSCCPARI  180
RARLDTKIQQ WKVVSFYEEH PHELVAPLDV TMMPEYRTFS VSDKAQAKNL HDIGIRTCHI  240
LGYLAAQKAY VRKKDTLLEF INNMETVVSH YRNNERVAEF NSKYTAPVLV TSLPTLEDFA  300
AKTFTRNMFR EVRKKIEDAC AMNTELVIQD GGKLYFKCNI FGVPEIHHVV EFDRVRGILR  360
CKCLWFENRG IPCMHIFACL KHQHVEVIPE SLVCKRWTKN AKSDFMKSNV DDPSDSDKVL  420
KCRLGVLGAE CSRLMDLACK NSSDFVEVMN SVVDTITKLQ KRGENPRNAN LDDDCVGDPL  480
VVKSKGAPKK NSKFKQQRNV TGHYNKSCPN APGRIPKEPV DDYTETNISS ILPKHKRHDS  540
VKNQHKMEKD RNIGGGTAPT SAAKSAFIDQ VKTSSLGPNI PVCASTSNEE SGMSSILAGS  600
FVVAPETGMA A
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2QF0G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025635826.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AG210.0A0A445AG21_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.25e-14FAR1-related sequence 3