PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.2H1IY

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 284aa MW: 32656.4 Da PI: 4.8849

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.2H1IY	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.5	1.7e-16	89	160	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +fYn+Y ++ GFs rk++++ks+ + + ++fvC +eg++ ++++ + ++++++etr+gC a+++++++ Araip.2H1IY 89 EFYNRYVRTRGFSARKNRTRKSRA-DVLKLKNFVCHREGFKPQNNNGiGNFKKKPTPETRCGCSAMMEIRLDA 160 6******************955.55999*******9999887788999*************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-13	89	160	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGQKFSHEGV NSEHIPYDQY EQEEEKHDEV NEDYMDEDDT NVEPMFDYHG FDEGYNIDSL 60 EDIGMIEFWN IRDEDICHFH FSDVNIAFEF YNRYVRTRGF SARKNRTRKS RADVLKLKNF 120 VCHREGFKPQ NNNGIGNFKK KPTPETRCGC SAMMEIRLDA PSGRTIWLSS FNTLIDVSTI 180 FEVQADLASV NGRPSMQTCF QQLERSAANV YTLSIFYMFQ PILVRAASMK ERIILEVELS 240 SLTFSSLAIK QRFATSSSSE SDSSSFSHDI FGQLGLMSPT SPHS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.2H1IY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016164871.2	1e-105	uncharacterized protein LOC107607423
Refseq	XP_025625227.1	1e-104	uncharacterized protein LOC112717401
Refseq	XP_025630504.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025630505.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025630506.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025630507.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025658999.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025659000.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025659001.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025659002.1	1e-103	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025664973.1	1e-105	uncharacterized protein LOC112763541
Refseq	XP_029149478.1	1e-103	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A445B882	1e-103	A0A445B882_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23654	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-08	FAR1-related sequence 10