PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2C5BE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23370 Da    PI: 10.3428
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2C5BEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.43.9e-23959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ienk+ rqvtfskRr+g+ KKA+E+S LCda+ a iif ++gkl  +ss
  Araip.2C5BE  9 KQIENKISRQVTFSKRRTGLKKKAHEISLLCDAQLAFIIFNTRGKLSHFSS 59
                 78**********************************************996 PP
2K-box84.52.2e-28841721199
        K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  +  +e++  e  kL++++e L+r++R+l G+dL+sLsl+eLq+Le+qLe slk+iR kKn+ ++e+i+ l kk k+lqe+n +L+k+++
  Araip.2C5BE  84 SGSQENYALECLKLRSKVEVLERNIRNLAGNDLDSLSLRELQNLEHQLEASLKRIRVKKNNTMKESISLLHKKAKALQERNSTLTKEIK 172
                  456799********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.497161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-28275IPR002100Transcription factor, MADS-box
CDDcd002651.05E-33273No hitNo description
PRINTSPR004049.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-211157IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.8E-2486171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.5187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRGKVELKQ IENKISRQVT FSKRRTGLKK KAHEISLLCD AQLAFIIFNT RGKLSHFSSH  60
SSVENILERY ERHVNALKIN GGESGSQENY ALECLKLRSK VEVLERNIRN LAGNDLDSLS  120
LRELQNLEHQ LEASLKRIRV KKNNTMKESI SLLHKKAKAL QERNSTLTKE IKDKKTVVVE  180
DPDCWVEQTL MQSPQISLPA LTLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-16173172MEF2C
5f28_B9e-16173172MEF2C
5f28_C9e-16173172MEF2C
5f28_D9e-16173172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2C5BE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179278.11e-147truncated transcription factor CAULIFLOWER A-like
RefseqXP_025680954.11e-147truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-66AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A444X8W31e-146A0A444X8W3_ARAHY; Uncharacterized protein
STRINGGLYMA13G06811.14e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-68AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]