PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.29KUE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 465aa    MW: 52494.6 Da    PI: 6.803
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.29KUEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.2e-35731652103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++l+ +isw ++g sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF ++ F++gkk+ll++i+
   Araip.29KUE  73 FLSKTFDLVDDPSLDPIISWGSTGASFVVWDPMEFSRLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRGKKHLLKNIQ 160
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
   Araip.29KUE 161 RRRST 165
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.16E-3468162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-5669162IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.9E-3770162IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.1E-3173162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-187396IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-18111123IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340112136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-18124136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MALLCHRHRR SSTPTPTVAT FHRLSTLLRF HSNPPSPFRS PSTPIHPSHI TTQNQFQPIT  60
PLECLHGNPV PPFLSKTFDL VDDPSLDPII SWGSTGASFV VWDPMEFSRL VLPRNFKHNN  120
FSSFVRQLNT YGFRKIDTDK WEFFNEAFQR GKKHLLKNIQ RRRSTQSQQV GSYIGTSTDA  180
GRPGLEVEIE LLRKERSMLM QEVVDLQQQQ RRTVHHAGEV NQRLESAEQR QKQMVSFLAK  240
LFQNPAFLAR LRDKKEQRQI ESPKARRKFI KHQHEAGNSE TPKGQVVRYQ PDWRNRTVSS  300
ETPELNPVSF EQSPQYLSQD LAREISVGAE NLTSQLDKIV SDELDALHEA MPTLGIVGEG  360
SSSYGLEDPL SKGKNAFNPS QDVLSEYFED AWDPAFNASV AASSCGNELW GNPVNHVVPE  420
FGGTSGVSDI WDIGSGSLGI DKWPADESPM DKKESQGGQP EDDRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-237016717125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248256ARLRDKKEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.29KUE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184779.10.0heat stress transcription factor A-3
SwissprotQ8GYY11e-100HSFA3_ARATH; Heat stress transcription factor A-3
TrEMBLV7BH710.0V7BH71_PHAVU; Uncharacterized protein
STRINGXP_007145255.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-102heat shock transcription factor A3
Publications ? help Back to Top
  1. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hu Z, et al.
    Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis.
    Plant J., 2015. 84(6): p. 1178-91
    [PMID:26576681]
  5. Song C,Chung WS,Lim CO
    Overexpression of Heat Shock Factor Gene HsfA3 Increases Galactinol Levels and Oxidative Stress Tolerance in Arabidopsis.
    Mol. Cells, 2016. 39(6): p. 477-83
    [PMID:27109422]
  6. Kim GD,Cho YH,Lee BH,Yoo SD
    STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
    Plant Physiol., 2017. 173(4): p. 2370-2382
    [PMID:28223317]
  7. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]