PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.273K6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 554aa    MW: 62715.8 Da    PI: 6.4695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.273K6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++  +G g+W++++ + g+ R +k+c++rw +yl
      Araip.273K6 15 KGLWSPEEDNKLRNYILNYGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding491.4e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E++ ++  +++lG++ W+ Ia++++ gRt++++k++w++yl
      Araip.273K6  68 RGMFTKQEEDTILTFHHMLGNK-WSQIAQRLP-GRTDNEIKNYWHSYL 113
                      789*******************.*********.************997 PP
3Myb_DNA-binding59.57.5e-19272318248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+WT+eEde l++++k++G g+W+t+++  g+ R++k+c++rw +yl
      Araip.273K6 272 GAWTPEEDEALIEYIKKHGHGSWRTVPKQAGLLRCGKSCRLRWINYL 318
                      68*****************************99************97 PP
4Myb_DNA-binding50.93.5e-16324367146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++TteE+  +++++ +lG++ W++Ia++++ gRt++++k++w++
      Araip.273K6 324 RGPFTTEEEGTIIQLHGMLGNR-WAAIASHLP-GRTDNEIKNFWNT 367
                      89********************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-21965IPR009057Homeodomain-like
PROSITE profilePS5129416.0641062IPR017930Myb domain
SuperFamilySSF466893.56E-2713109IPR009057Homeodomain-like
SMARTSM007173.2E-101464IPR001005SANT/Myb domain
PfamPF002491.4E-121562IPR001005SANT/Myb domain
CDDcd001672.59E-81862No hitNo description
PROSITE profilePS5129424.41863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2466117IPR009057Homeodomain-like
SMARTSM007175.1E-1467115IPR001005SANT/Myb domain
PfamPF002495.3E-1568113IPR001005SANT/Myb domain
CDDcd001678.77E-1071113No hitNo description
PROSITE profilePS5129415.499266318IPR017930Myb domain
SMARTSM007176.7E-14270320IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-24272325IPR009057Homeodomain-like
PfamPF002495.4E-17272318IPR001005SANT/Myb domain
SuperFamilySSF466891.98E-30272365IPR009057Homeodomain-like
CDDcd001671.04E-11273318No hitNo description
PROSITE profilePS5129424.901319373IPR017930Myb domain
SMARTSM007171.1E-14323371IPR001005SANT/Myb domain
PfamPF002497.6E-15324368IPR001005SANT/Myb domain
CDDcd001672.04E-9326367No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25326373IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGCQQIEKTK AKHRKGLWSP EEDNKLRNYI LNYGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FTKQEEDTIL TFHHMLGNKW SQIAQRLPGR TDNEIKNYWH SYLKKKVAKE  120
KEIDESHQQV QYATSSSETI DYSFSPNKLV TNDPNYGLLL QNMDKPAPNL WLSLDQVNGG  180
SSMNSDESLM ILGNGFDQNS TFQEDLMHMS SSEGPFGGEY QNSLSQCSAT EVYNSQVNKF  240
SNQVVGNDYI QHFIDDDADL CSNFSLNNGA IGAWTPEEDE ALIEYIKKHG HGSWRTVPKQ  300
AGLLRCGKSC RLRWINYLRP DIKRGPFTTE EEGTIIQLHG MLGNRWAAIA SHLPGRTDNE  360
IKNFWNTQLK KRLPRSSFVP DHNNVKSESP STRHMVQWES ARVEAEARLS MESSLHNSFS  420
ASESYQDHFL QLWHSEVGQS FRVIKAKEEG AVVTQNLVSQ ASLSSSKLES SSEVSLKLKN  480
TESSFFADIT HEQQKSSSKA KLEDGGTAES SLGYYEFLDT SDSSINHLLD VPDGEVLFLG  540
QNDNFLNTLD GRCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26153737108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.273K6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025656825.10.0transcription factor MYB41
SwissprotQ9M2D91e-83MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A444YXQ20.0A0A444YXQ2_ARAHY; Uncharacterized protein
STRINGXP_007143400.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-81myb domain protein 17