PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.24TKU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 260aa    MW: 29359.8 Da    PI: 5.905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.24TKUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l + +   G  +W+t+++  g++R++k+c++rw +yl
      Araip.24TKU 14 KGPWTSEEDKKLMNFIMSNGQCCWRTVPKLAGLKRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1670111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T  E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
      Araip.24TKU  70 LTHSEEQLVIDLHARLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111
                      5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-22563IPR009057Homeodomain-like
PROSITE profilePS5129414.297961IPR017930Myb domain
SuperFamilySSF466894.87E-2711108IPR009057Homeodomain-like
SMARTSM007171.5E-111363IPR001005SANT/Myb domain
PfamPF002493.1E-141461IPR001005SANT/Myb domain
CDDcd001671.11E-71661No hitNo description
PROSITE profilePS5129426.76262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2464116IPR009057Homeodomain-like
SMARTSM007178.6E-1566114IPR001005SANT/Myb domain
PfamPF002497.9E-1570111IPR001005SANT/Myb domain
CDDcd001678.85E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRQPCCDKV GVKKGPWTSE EDKKLMNFIM SNGQCCWRTV PKLAGLKRCG KSCRLRWTNY  60
LRPDLKRGLL THSEEQLVID LHARLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPVTHEPLD KQQLVSSSSS SSESAEQLPQ PQQQLRETVD NNNDNNGVPV PINSQQENSS  180
SSSPPTENSC SASGDGDESL ILNSLWLDDT PLIDALWDTT PTSWLLDCQD FGIHDFGFNC  240
FNETESNALQ TLETEETKWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.24TKU
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202043.10.0protein ODORANT1
RefseqXP_025653675.10.0protein ODORANT1
SwissprotQ50EX62e-95ODO1_PETHY; Protein ODORANT1
TrEMBLA0A444Z8W50.0A0A444Z8W5_ARAHY; Uncharacterized protein
STRINGGLYMA01G42050.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.18e-85myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]