PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1U8TI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 322aa    MW: 36649.6 Da    PI: 6.6699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1U8TIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+g +W + + ++g++R++k+c++rw++yl
      Araip.1U8TI 14 KGPWSPEEDAKLKSYIQQHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.75966IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-201261IPR009057Homeodomain-like
SMARTSM007172.1E-121364IPR001005SANT/Myb domain
PfamPF002494.3E-151462IPR001005SANT/Myb domain
SuperFamilySSF466892.19E-181588IPR009057Homeodomain-like
CDDcd001671.78E-91662No hitNo description
Gene3DG3DSA:1.10.10.601.7E-56287IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIQ QHGTGGNWIA LPPKIGLKRC GKSCRLRWLN  60
YLRPNLKHGD FSQEEDNIIC SLYVSIGSST THQQQQQQQQ QCYWPHFMPV LPIPNLPYST  120
TNNNQQFYLG SSFNDQDSIK KLLIKLGGRF HNDVDYHNYH PTLGDGLLNH LHQSQGTTTY  180
YSNNSTQQQV LYHQEQIQFD DGNNGLHHDE MVQRKGNLNN EIEEEMVGNT NFIPQRLLNN  240
GLGFFHGDMV FSEDKIIIGS TTTRPNWGEN SSGNSVIYHP LISSSNYQED QGVRPSEECA  300
LQEYSTIATM RTNSSNSMLH VQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1U8TI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818234e-36LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132574e-36LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207866.11e-165transcription factor MYB36-like
TrEMBLA0A445CXE61e-162A0A445CXE6_ARAHY; Uncharacterized protein
STRINGGLYMA06G05260.11e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-55myb domain protein 84