PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1SH3C

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 453aa MW: 51054.4 Da PI: 5.7069

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1SH3C	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.3e-07	3	24	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t++C+f+ar G C G++C F H Araip.1SH3C 3 TRICKFYAR-GACLKGEQCDFYH 24 89*****.*********** PP
2	zf-CCCH	24.3	5.6e-08	34	56	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C f+++ G C yG+rC++ H+ Araip.1SH3C 34 QQICTFHQK-GLCAYGSRCRYKHV 56 678999999.*************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.352	1	27	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9E-4	2	26	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-5	3	28	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-7	3	25	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.024	32	57	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.788	32	58	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-5	34	56	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	129	153	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.455	133	154	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	9.42E-13	184	263	No hit	No description
Gene3D	G3DSA:3.30.40.10	5.8E-10	191	258	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	4.43E-4	195	258	No hit	No description
Pfam	PF00097	5.4E-7	196	256	IPR018957	Zinc finger, C3HC4 RING-type
PROSITE profile	PS50089	12.135	196	257	IPR001841	Zinc finger, RING-type
SMART	SM00184	2.1E-5	196	256	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	220	229	IPR017907	Zinc finger, RING-type, conserved site
SMART	SM00356	0.52	286	314	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.85	286	315	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MSTRICKFYA RGACLKGEQC DFYHERKDTD VSGQQICTFH QKGLCAYGSR CRYKHVNVSQ 60 ASSSANGCQS VVLDSAAAHT IQGASSSWVP KATKISPSDK HARRSLHKHQ DYLGNGDVSE 120 SSTSSAIPSE HLLCTFAAAN CPLGDKCSRV HGNQCLYCRK YCLHPTDRRV KDNHLRTCEK 180 KEKYLQSLKD SQEIECNVCL ERVLSKPKPA ECKFGLLPEC DHAFCISCIR NWRSSAPTSG 240 MDFNNTTNTV RTCPVCRKLS YFVIPSGIWY STKEEKQEII DNYKANCKLI DCKHFNFGDG 300 NCPFGTSCFY KHTVKPGSYT WIHKRPPPRR RPNNLDMYDV LDMLGDVDLS GGELYSIMRD 360 NDMFDEMDPY EMMAISDMLV TGPGPCPFDS EEDDDVDFIR MTSLAEALAS GVDDFGPDDF 420 RNDALDPMEA ALFSMMMHSN IEEDEEDSDD EIY

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MSTRICKFYA RGACLKGEQC DFYHERKDTD VSGQQICTFH QKGLCAYGSR CRYKHVNVSQ  60
ASSSANGCQS VVLDSAAAHT IQGASSSWVP KATKISPSDK HARRSLHKHQ DYLGNGDVSE  120
SSTSSAIPSE HLLCTFAAAN CPLGDKCSRV HGNQCLYCRK YCLHPTDRRV KDNHLRTCEK  180
KEKYLQSLKD SQEIECNVCL ERVLSKPKPA ECKFGLLPEC DHAFCISCIR NWRSSAPTSG  240
MDFNNTTNTV RTCPVCRKLS YFVIPSGIWY STKEEKQEII DNYKANCKLI DCKHFNFGDG  300
NCPFGTSCFY KHTVKPGSYT WIHKRPPPRR RPNNLDMYDV LDMLGDVDLS GGELYSIMRD  360
NDMFDEMDPY EMMAISDMLV TGPGPCPFDS EEDDDVDFIR MTSLAEALAS GVDDFGPDDF  420
RNDALDPMEA ALFSMMMHSN IEEDEEDSDD EIY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1SH3C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016170826.1	0.0	E3 ubiquitin-protein ligase makorin
Refseq	XP_025673519.1	0.0	E3 ubiquitin-protein ligase makorin
Swissprot	E0X9N4	1e-105	C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBL	A0A444Y1L8	0.0	A0A444Y1L8_ARAHY; Uncharacterized protein
STRING	GLYMA15G42820.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15143	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-101	C3H family protein

Publications ? help Back to Top
Wang CT,Ho CH,Hseu MJ,Chen CM The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes. Plant Mol. Biol., 2010. 74(1-2): p. 155-66 [PMID:20652368]