PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1S1BX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 297aa    MW: 33569.9 Da    PI: 8.3219
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1S1BXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.5e-19159192134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Araip.1S1BX 159 CSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 192
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-19153205IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-13154193No hitNo description
Gene3DG3DSA:3.30.50.109.1E-16157192IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.519157189IPR000679Zinc finger, GATA-type
CDDcd002023.11E-14158190No hitNo description
PfamPF003202.9E-17159192IPR000679Zinc finger, GATA-type
PROSITE patternPS003440159184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMPTTTTTLL DLNQDLTLSH DDDDQEHQHP FATTHHQQQQ QQQQPSSLSF PILLNPLPHQ  60
KVDEKIDDAN CSSGSRDHSE KPNHGSGIIK LIWKNKKQEE AEEEEEEVIP KWMPSKMRMM  120
RKMMISDHHQ QQQQEQEIPI IGTDDDNNNS TTAPTVRVCS DCHTTKTPLW RSGPRGPKSL  180
CNACGIRQRK ARRAAMAAAA ANGTTLAAAE VNKFGRSKEK QLKSKTCSSE LMKKKRNKLA  240
AAARGKQSHH HHHNDYCFED LRLRLLSKNL AVHQVFPQDE KEAAILLMAL SYGLLLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231238MKKKRNKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1S1BX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202010.10.0putative GATA transcription factor 22 isoform X1
RefseqXP_025630844.10.0putative GATA transcription factor 22
TrEMBLA0A445AUP71e-146A0A445AUP7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-22cytokinin-responsive gata factor 1