PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1N2U4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 702aa    MW: 76331.3 Da    PI: 6.0993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1N2U4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07275295526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  Araip.1N2U4 275 PCPDFRK-GACRRGDMCEYAHG 295
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.9E-1814150IPR020683Ankyrin repeat-containing domain
CDDcd002043.72E-1515146No hitNo description
SuperFamilySSF484033.26E-1718138IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-1051126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00685787IPR002110Ankyrin repeat
PROSITE profilePS5029717.79457164IPR020683Ankyrin repeat-containing domain
SMARTSM002486.0E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008811.62192127IPR002110Ankyrin repeat
SMARTSM003564.0E-6270296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4274297IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4303333IPR000571Zinc finger, CCCH-type
SMARTSM0035643305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MNHLTVETED SFAGLLELAA NNDVDGFKRM IECDPSSVDE VGLWYGRRKG SKQMVNEQRT  60
PLMVAAIYGS IDVMRMILSL SEADINRPSG ADKSTALHCA ASGGSENAVD AVKLLLAAGA  120
DPNSVDANGH RPIDVIVSPP KLESVKNSLE ELLQTDDSIT GCNLRVITTT FNSYSPPLST  180
SPENGSPSAP DFQLKLKSSD VPASSVSEKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW  300
LHPAQYRTRL CKDGTSCSRR VCFFAHTAEE LRPLYVSTGS AVPSPRSSTS SAMDFAAAMS  360
MLPGSPSSMS VMSPSPFTPP MSPSANGMSH SSVAWPQPNV PALHLPGSNL QSSRLRSSLN  420
ARDIPMDDFD MLSDYDQQQQ LMNELSCLSP QPMNSNSLNR SGRMKPLTPS NLDDLFSAES  480
SSPRFADPAL TSTVFSPTHK SAVFNQFQQQ QSLLSPINTN FSSKNVDHHL LQASFGVQAS  540
GRMSPRTVEP ISPMSSRLSM LAQREKQQQF RSLSSRELGS NSATAAAAAS VNSWSKWGSP  600
NGKVDWAVGA DELGGGGKLR RSSSFELGNN GEEPDLSWVQ SLVKESPTEI KEKLATNVSS  660
AAAAGSLNEG SNMGTQMESV DHAVLGAWLE QMQLDHLVAQ QN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552GRRKGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1N2U4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204977.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_016204978.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_020959423.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_025658961.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_025658963.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_025658964.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A444YHI70.0A0A444YHI7_ARAHY; Uncharacterized protein
STRINGAES813750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]