PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.166TL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28340.1 Da    PI: 9.7567
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.166TLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.6e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+ KKA+E+SvLCdaeva+iifs++gkl+ +ss
  Araip.166TL  9 KRIENKINRQVTFSKRRAGLVKKANEISVLCDAEVALIIFSTKGKLFQFSS 59
                 79***********************************************96 PP
2K-box104.81e-3483174899
        K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++++  +++++ e+akLk+++e Lqr+qRh++GedL+ Ls++eLq+LeqqL+++lk+iRs+Kn++++e+i+ lqkkek+l+e+n++L kk++
  Araip.166TL  83 ANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIK 174
                  455566789*********************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
CDDcd002657.97E-41279No hitNo description
SuperFamilySSF554553.66E-33285IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.4189179IPR002487Transcription factor, K-box
PfamPF014864.2E-2989173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLVK KANEISVLCD AEVALIIFST KGKLFQFSSD  60
SCMERIIERY ERYSYAERQQ LVANAQGPNA NWTLEHAKLK ARVEVLQRNQ RHFMGEDLQG  120
LSMRELQNLE QQLDSALKQI RSRKNQIMYE NISLLQKKEK ALNEQNNSLA KKIKGKEKAT  180
TEQTRQLELQ DNYTVAPQTS ENLNIRGMPQ DRSDNEEHND NEEGIQINAS ANILLPNWMI  240
PPTNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21174173MEF2 CHIMERA
6byy_B1e-21174173MEF2 CHIMERA
6byy_C1e-21174173MEF2 CHIMERA
6byy_D1e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.166TL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181890.10.0truncated transcription factor CAULIFLOWER A-like
RefseqXP_025683751.10.0truncated transcription factor CAULIFLOWER A
SwissprotQ424299e-99AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A444X7M51e-180A0A444X7M5_ARAHY; Uncharacterized protein
STRINGXP_008393256.11e-106(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-98AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]