PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.0A4CX

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SRS

Protein Properties

Length: 285aa MW: 30754.2 Da PI: 7.5015

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.0A4CX	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212	1.5e-65	75	221	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +++CqdCGnqakkdC+h RCRtCC+srgf+C+thvkstWvpaakrrerq++la++++++ +a e + + ++++ +s+ +++ +++ le Araip.0A4CX 75 GTNCQDCGNQAKKDCVHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQHTLASLQQQQPGRAGEGEGGGGDVH--SRRTREASACVPMPITTTGLEL 170 569**************************************************9999998866666555554..4444444455555556677999 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P+e++s+avfrcv+vs +d +e +aYqtav+igGhvfkGiLydqG++ Araip.0A4CX 171 GQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPD 221 9**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.7E-63	75	221	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-26	77	119	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.7E-24	172	220	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDVISTAIIW CNLTWQIWPH HHQPSYYSFG LGPSSERNTT TNLNDDVSVS FSDESNRFGF 60 TVMRSSSSGS GLGSGTNCQD CGNQAKKDCV HLRCRTCCRS RGFQCSTHVK STWVPAAKRR 120 ERQHTLASLQ QQQPGRAGEG EGGGGDVHSR RTREASACVP MPITTTGLEL GQFPPELNSP 180 AVFRCVKVSP MDAPDERYAY QTAVNIGGHV FKGILYDQGP DGPFATNAAT AGEGSSHGGA 240 EPHHQQLSLI TTTTGAGITF DPSQLYPAPM NAFMAGTQFF PPPRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.0A4CX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016207417.1	0.0	protein SHI RELATED SEQUENCE 3-like
Refseq	XP_025663594.1	0.0	protein SHI RELATED SEQUENCE 3
Swissprot	Q9LQZ5	1e-68	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A444YGH0	0.0	A0A444YGH0_ARAHY; Uncharacterized protein
STRING	GLYMA17G37410.1	1e-106	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-68	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]