PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.06TYZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 389aa    MW: 40984.8 Da    PI: 7.7353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.06TYZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-1083107126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  Araip.06TYZ  83 FKTKLCCKFRA-GTCPYVTNCNFAHS 107
                  69*********.*************8 PP
2zf-CCCH18.53.6e-06162187126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  Araip.06TYZ 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                  77888********************7 PP
3zf-CCCH42.88.9e-14251276126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  Araip.06TYZ 251 WKTRICNKWEMTGYCPFGNKCHFAHG 276
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-880113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-1480115IPR000571Zinc finger, CCCH-type
SMARTSM003560.001582108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.86882109IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-783107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7160189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-9160189IPR000571Zinc finger, CCCH-type
SMARTSM003560.086161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098161189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-15247277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-9248277IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225250278IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10251276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDYSRDGDVV QIIAGAANDP SVWATEEDYK FWNNDGDSTP SNSGGGSGYD QRKKARSSQD  60
NNATTSSSNN NSNRAKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSVEE LRRPPPNWQE  120
IVAAHEEERA NAGSDTVVPA REEFQIPILG SSNYSGESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KYRESVAISL GPGGYGGGGG GAGGGGGGGG TGSGGGASAG AAAGAGGGGN  240
GNGPNSKPSN WKTRICNKWE MTGYCPFGNK CHFAHGAAAS HLHGKKFDSG VMTAELHRYG  300
GGLVEGESRD PASAAAPDAK QGGVPSKSPA DNVVASVTPV AHSDSMYHMG VPSQRPTIVL  360
QRPGQRAHQK WKGPDKISRI YGDWIDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.06TYZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201128.10.0zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ84UQ31e-122C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A444WVS80.0A0A444WVS8_ARAHY; Uncharacterized protein
STRINGXP_004509736.11e-163(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-113C3H family protein