PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.01NMU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 587aa    MW: 64225.5 Da    PI: 9.1632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.01NMUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-055274123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  Araip.01NMU 52 FICEVCNKGFQREQNLQLHRRGH 74
                 89*******************88 PP
2zf-C2H211.90.00071128150123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Araip.01NMU 128 WKCDKCSKKYAVQSDWKAHSKTC 150
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.2E-55174IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.995274IPR007087Zinc finger, C2H2
SMARTSM003550.00525274IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.43E-75274No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035513093123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-5116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-7123148No hitNo description
SMARTSM00355150128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MAAASSTPFL GVREESQSQI THQSSIAASS ASTPPTVPQK KRRNQPGTPS KFICEVCNKG  60
FQREQNLQLH RRGHNLPWKL KQKTNKEPKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYS  120
RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA  180
QESARHPNGT MNPLGGTHLY ATNTNHMTLG LSQLGTQISQ FQNHQSGATH SSGGGGILRL  240
GSAGAAKFEH LIPPLSHQSS SFGHSPQSSL TNPSPFFIND PNQAFEDNNQ THQQGSLFSS  300
KQLHGLMQLP DLQGNTTNTN SNNSSNLFNL SFFPNNNNSS GTIIPDQFNS NQQGTTTSTL  360
YGDQVGSGLS SLFGNSSSLQ HENVSPHMSA TALLQKAAQM GPTTTTNNNN GSSILRGMCS  420
SSSNKSEREL VVSDHVAFGS DQRRSSMEND HHHQQHLHGL MNSIASNVGS TTTSSIFDNV  480
HQGNDDNNNN LSHHHHHHHQ FHQSLEDSSN TNKLPQNHLG VSFGGSDKLT LDFLGVGGMV  540
RNINTGATTH AFSQTHREQQ QQGMMSTLSS LDSDLKSAQS ATPSHRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33124185364Zinc finger protein JACKDAW
5b3h_F1e-33124185364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.01NMU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097921e-111AP009792.1 Lotus japonicus genomic DNA, clone: LjT42M11, TM2098, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942750.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015942751.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLA0A444XSD10.0A0A444XSD1_ARAHY; Uncharacterized protein
STRINGGLYMA20G32480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.13e-87indeterminate(ID)-domain 5