PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9737_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 595aa    MW: 67019.8 Da    PI: 10.089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9737_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-121464347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                     +W t+E++ll++av+++G+++W+++a +++      + +t+ +c+ +++++
    Neem_9737_f_1 14 AWGTWEELLLACAVHRYGNENWSSVATEVQkrssrlQLLTPRSCQQKYRDL 64
                     7***********************************99**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.144765IPR017877Myb-like domain
SuperFamilySSF466895.71E-6869IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-51163IPR009057Homeodomain-like
SMARTSM007171.7E-61167IPR001005SANT/Myb domain
CDDcd001674.73E-61464No hitNo description
PfamPF002491.2E-111464IPR001005SANT/Myb domain
SMARTSM002970.0028251354IPR001487Bromodomain
SuperFamilySSF473703.79E-11280352IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.2E-9280363IPR001487Bromodomain
PfamPF004391.5E-5281338IPR001487Bromodomain
PROSITE profilePS500149.904283335IPR001487Bromodomain
CDDcd043694.18E-9283349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDKPSDNFPE KQTAWGTWEE LLLACAVHRY GNENWSSVAT EVQKRSSRLQ LLTPRSCQQK  60
YRDLERRFVP NGAASLADNK SIPWLDELKK LRVAELKREL QRYDLSIVSL QLKVKRLTEE  120
RERNEIEKET KKPDQVINGE EEREGIDNKP ESGEESDREN RSVNESNSTD PKAEETEKET  180
EPAEPVPDKH VGGDVKPAGE DSCNGSCGSA AKKSAAKSER VDSPEAGESV AESKDSGETL  240
VIFMIKRMWD LSYWHRTFWM LALILLGVIV RSKYFKAHWE TSNYRNLIRQ LIDLEAIRTR  300
LEENWYSGCK SSFFRDLLLL FNNAILLFNK KSSESAAAIE LRQIVLKEMS RQTSNPNSSQ  360
KEQCLASLLP PVQVVKLESS DSLLSKPNIL APIIACRKRS SITAKRSVPS SLADKKGEPR  420
EQPVASAVKN GKTRADVKTK KNLEVDTKAE DYSSEEEEEI HSEDLEEGKT EKGRKNKVNV  480
KAKKRSAAKF LRRMKRSSSD KGLLLEMPKS EKAEQKKRNE SGKVDAKKEQ ITEKRSGGKG  540
GKKKQSPVKR NAGGPVTRAA ASPTPVTVVR GKRRRESVVE TEGSGSGQGR KRLRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429854.20.0uncharacterized protein LOC18038098
TrEMBLA0A067EGV20.0A0A067EGV2_CITSI; Uncharacterized protein
STRINGXP_006492877.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-54DNA-binding bromodomain-containing protein