PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9613_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 516aa    MW: 59611.2 Da    PI: 4.5528
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9613_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.58.5e-371295163374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +l+ + Aea+++++ ela+ +  r++e +sp g   +Rl  +  + L ++ a+      + l+ +      s+   aa+++ +++ P   f+h+ a
  Neem_9613_f_3 129 HLVKAYAEAMENQQRELAEVIARRINEKVSPVGGIQERLLYHSFQPLDKQQAE------NYLKQE-----CSEVFDAAFQAIYHMLPNGMFAHFGA 213
                    677789*******************************************9998......222222.....24566678999*************** PP

           GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....eg....ppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                    N+aIl a   + + +Hi+Dfd++ G+QW a++ ++a+++     +g    + +l++T ++ +e++   ++ + eet++rL++ A + g+++  +  
  Neem_9613_f_3 214 NSAILAACPYDaQVLHIVDFDMGAGIQWCAMIMSIAQQQnllqqNGiilqQITLKLTSIKWKEEDnydHEWRFEETKNRLHDCAYSNGLKLIVEE- 308
                    *********994555*********************9985665422777578********98888898999******************996665. PP

           GRAS 182 vakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvks.l............sPkvvvvveqe..adh.nsesFler 256
                      k+l++l  e+ ++k+     +E la n++++l ++ +++   +    e+L++ k+ l            +  +++  + e   +  n + F + 
  Neem_9613_f_3 309 --KELQNLASEMKKTKKnregkREWLAFNCMHALPHMGRRRNRRN--VMEFLSVAKEyLqanssntntsnnNRGIITYGDGEnwNKIrNCSGFGAF 400
                    ..789999888887777778889**************93333333..3556655554221111111111113347888877753333688899999 PP

           GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                      ++++yy al++s+e ++p+   ++r+ +E  ++g+ ++++   e+ +     e +e   + l+ +G++ +++s+++ ++ak ++r+ +   y+v
  Neem_9613_f_3 401 YDSSMDYYQALLESMEWNFPTRLeKARMAMECLFVGPFVSSLALFEEWK-----EMKEVGDSFLTGFGLQGARFSNENLMEAKVMVREGE-CLYSV 490
                    99*****************9887699***************99999998.....555666899*************************99.44888 PP

           GRAS 352 eee...sgslvlgWkdrpLvsvSaWr 374
                      e   ++ +vl W++ pL+ +SaWr
  Neem_9613_f_3 491 RTEgvnENVMVLEWNGTPLLRISAWR 516
                    85555589999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.3101494IPR005202Transcription factor GRAS
PfamPF035142.9E-34129516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MTKSDPFQLP FHENLLLDEF INYGVDIDDF LNQRDLFFPP FTTTDDSLDT SHPNFGSFSD  60
IGIEDSPFHF NELQFRLPIN DSSLDHFEDL DSYSIMEMEE IFDLTSAILP TLNLPREDME  120
IENQLGANHL VKAYAEAMEN QQRELAEVIA RRINEKVSPV GGIQERLLYH SFQPLDKQQA  180
ENYLKQECSE VFDAAFQAIY HMLPNGMFAH FGANSAILAA CPYDAQVLHI VDFDMGAGIQ  240
WCAMIMSIAQ QQNLLQQNGI ILQQITLKLT SIKWKEEDNY DHEWRFEETK NRLHDCAYSN  300
GLKLIVEEKE LQNLASEMKK TKKNREGKRE WLAFNCMHAL PHMGRRRNRR NVMEFLSVAK  360
EYLQANSSNT NTSNNNRGII TYGDGENWNK IRNCSGFGAF YDSSMDYYQA LLESMEWNFP  420
TRLEKARMAM ECLFVGPFVS SLALFEEWKE MKEVGDSFLT GFGLQGARFS NENLMEAKVM  480
VREGECLYSV RTEGVNENVM VLEWNGTPLL RISAWR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481416.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2H5MXM10.0A0A2H5MXM1_CITUN; Uncharacterized protein
STRINGXP_006481416.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-15GRAS family protein