PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9613_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GRAS | ||||||||
Protein Properties | Length: 516aa MW: 59611.2 Da PI: 4.5528 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 118.5 | 8.5e-37 | 129 | 516 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +l+ + Aea+++++ ela+ + r++e +sp g +Rl + + L ++ a+ + l+ + s+ aa+++ +++ P f+h+ a Neem_9613_f_3 129 HLVKAYAEAMENQQRELAEVIARRINEKVSPVGGIQERLLYHSFQPLDKQQAE------NYLKQE-----CSEVFDAAFQAIYHMLPNGMFAHFGA 213 677789*******************************************9998......222222.....24566678999*************** PP GRAS 99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....eg....ppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181 N+aIl a + + +Hi+Dfd++ G+QW a++ ++a+++ +g + +l++T ++ +e++ ++ + eet++rL++ A + g+++ + Neem_9613_f_3 214 NSAILAACPYDaQVLHIVDFDMGAGIQWCAMIMSIAQQQnllqqNGiilqQITLKLTSIKWKEEDnydHEWRFEETKNRLHDCAYSNGLKLIVEE- 308 *********994555*********************9985665422777578********98888898999******************996665. PP GRAS 182 vakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvks.l............sPkvvvvveqe..adh.nsesFler 256 k+l++l e+ ++k+ +E la n++++l ++ +++ + e+L++ k+ l + +++ + e + n + F + Neem_9613_f_3 309 --KELQNLASEMKKTKKnregkREWLAFNCMHALPHMGRRRNRRN--VMEFLSVAKEyLqanssntntsnnNRGIITYGDGEnwNKIrNCSGFGAF 400 ..789999888887777778889**************93333333..3556655554221111111111113347888877753333688899999 PP GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 ++++yy al++s+e ++p+ ++r+ +E ++g+ ++++ e+ + e +e + l+ +G++ +++s+++ ++ak ++r+ + y+v Neem_9613_f_3 401 YDSSMDYYQALLESMEWNFPTRLeKARMAMECLFVGPFVSSLALFEEWK-----EMKEVGDSFLTGFGLQGARFSNENLMEAKVMVREGE-CLYSV 490 99*****************9887699***************99999998.....555666899*************************99.44888 PP GRAS 352 eee...sgslvlgWkdrpLvsvSaWr 374 e ++ +vl W++ pL+ +SaWr Neem_9613_f_3 491 RTEgvnENVMVLEWNGTPLLRISAWR 516 85555589999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.3 | 101 | 494 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-34 | 129 | 516 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MTKSDPFQLP FHENLLLDEF INYGVDIDDF LNQRDLFFPP FTTTDDSLDT SHPNFGSFSD 60 IGIEDSPFHF NELQFRLPIN DSSLDHFEDL DSYSIMEMEE IFDLTSAILP TLNLPREDME 120 IENQLGANHL VKAYAEAMEN QQRELAEVIA RRINEKVSPV GGIQERLLYH SFQPLDKQQA 180 ENYLKQECSE VFDAAFQAIY HMLPNGMFAH FGANSAILAA CPYDAQVLHI VDFDMGAGIQ 240 WCAMIMSIAQ QQNLLQQNGI ILQQITLKLT SIKWKEEDNY DHEWRFEETK NRLHDCAYSN 300 GLKLIVEEKE LQNLASEMKK TKKNREGKRE WLAFNCMHAL PHMGRRRNRR NVMEFLSVAK 360 EYLQANSSNT NTSNNNRGII TYGDGENWNK IRNCSGFGAF YDSSMDYYQA LLESMEWNFP 420 TRLEKARMAM ECLFVGPFVS SLALFEEWKE MKEVGDSFLT GFGLQGARFS NENLMEAKVM 480 VREGECLYSV RTEGVNENVM VLEWNGTPLL RISAWR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481416.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2H5MXM1 | 0.0 | A0A2H5MXM1_CITUN; Uncharacterized protein | ||||
STRING | XP_006481416.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14344 | 10 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 6e-15 | GRAS family protein |