PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9479_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | EIL | ||||||||
Protein Properties | Length: 617aa MW: 70041 Da PI: 5.2675 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 515.3 | 2.8e-157 | 46 | 423 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWk 96 +el++rmw+ +m+lkrlke++k ke ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWk Neem_9479_f_1 46 DELERRMWRYKMRLKRLKEQNKG----KEG-IDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWK 136 79*******************98....788.9**************************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--. CS EIN3 97 ekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgt 192 +kv+fdrngpaai+kyq +n i+++++++++ ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtGke+ww++lgl+kdqg+ Neem_9479_f_1 137 DKVRFDRNGPAAIAKYQVDNSIPGSNDGCNS-IGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGKEEWWPQLGLPKDQGP 231 *****************************88.9*************************************************************** PP -----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX...XXXXXXXXXXXXXXXXXXXX CS EIN3 193 ppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss...slrkqspkvtlsceqkedve 285 ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++s s+ s ++++++ ++ dve Neem_9479_f_1 232 PPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDSCptlSSAGASGSLVINDCNEFDVE 327 ***********************************************************************55445666699************** PP XXXXXX.XXXXXXXXXX..............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXX CS EIN3 286 gkkeskikhvqavktta..............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisq 351 g +++ +v ++k ++ +f+++rkrk ++ ++k+ +k ++tc+ q+++s+++l+ +d++s+++ Neem_9479_f_1 328 GAEDEPNFDVVECKPQNlissnlgmermrerlpiqqppypikgeavaNFDFARKRKPSNDLNMKMDQK--IYTCEYIQCPYSDPRLGYHDRTSRDN 421 666666688999999999*************************************9666666666655..7************************* PP XX CS EIN3 352 ne 353 ++ Neem_9479_f_1 422 HQ 423 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 9.5E-130 | 46 | 293 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 7.6E-77 | 166 | 303 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 1.96E-62 | 172 | 296 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MFDDMGFCGD VNFFSAPLGD TDVAPPKTEP EATLEDEYSD EEIDVDELER RMWRYKMRLK 60 RLKEQNKGKE GIDMAKQRQS QEQARRKKMS RAQDGILKYM LKMMEVCKAQ GFVYGIIPEK 120 GKPVTGASDN LREWWKDKVR FDRNGPAAIA KYQVDNSIPG SNDGCNSIGP TPHTLQELQD 180 TTLGSLLSAL MQHCDPPQRR FPLEKGVPPP WWPTGKEEWW PQLGLPKDQG PPPYKKPHDL 240 KKAWKVGVLT AVIKHMSPDI AKIRKLVRQS KCLQDKMTAK ESATWLAIIN QEEALARELY 300 PDSCPTLSSA GASGSLVIND CNEFDVEGAE DEPNFDVVEC KPQNLISSNL GMERMRERLP 360 IQQPPYPIKG EAVANFDFAR KRKPSNDLNM KMDQKIYTCE YIQCPYSDPR LGYHDRTSRD 420 NHQLTCPYRT NASDFGGSNF QVNEVKPVIF PQTFAQSKPA GPSFNPVQPS FDISGLGVPE 480 DGQKMISELM SVYDNNIQSN RSLNPSNNAI VTEAQGPLQP TVQHEQEYFN GQGVVMDGNL 540 FEGSKMRNNN HQMFPREENQ FDHFKIMNSP FETNQNNSSF QLMFSTPFDL GSFDYKEDLQ 600 AAGIDTLPKQ QDTSMWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 1e-86 | 171 | 303 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 1e-86 | 171 | 303 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446382.1 | 0.0 | protein ETHYLENE INSENSITIVE 3 | ||||
Refseq | XP_006446383.1 | 0.0 | protein ETHYLENE INSENSITIVE 3 | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | V4TGZ7 | 0.0 | V4TGZ7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006446382.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2135 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |