PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9363_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 428aa MW: 49275.3 Da PI: 9.502 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.3e-17 | 13 | 105 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv ++s +++l++p kf++++g + tl ++g Wev l +k ++++++ +GW +Fv+ + +++g f+vF++ ++s+f +v + Neem_9363_f_1 13 FFKVILQSTIE-NKMLRIPEKFVRRFGDE--LFSVATLVVPEGGAWEVGL--KKDGRKIWFHDGWIDFVEFHSICAGHFLVFEYRENSSF--HVLI 101 77777665555.557***********755..44589999***********..999999**************************988999..**** PP E-SS CS B3 97 frks 100 f+ks Neem_9363_f_1 102 FDKS 105 *985 PP | |||||||
2 | B3 | 52.1 | 1.2e-16 | 335 | 425 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++s + s+ +++p kfa+++ + ++ k ++++d++g++W v+l + s+++ l++GW+ F k +L gD++vF+l+ ++ l+++v+r+ Neem_9363_f_1 335 VRSKKTYSHYMYVPAKFADKYLRSDTTAKFIKIQDSDGKEWPVRL---RWSQWCGLKGGWRAFRKGMNLGGGDVCVFELIMKKVIVLKFSVLRA 425 5677788899***********445567789***************...6677889***********************9977777777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.2E-25 | 7 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-24 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-21 | 11 | 103 | No hit | No description |
PROSITE profile | PS50863 | 13.719 | 12 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-14 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-21 | 13 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-18 | 324 | 414 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-20 | 324 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.45E-14 | 329 | 424 | No hit | No description |
PROSITE profile | PS50863 | 12.675 | 330 | 426 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-12 | 331 | 426 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-15 | 335 | 424 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MGAGSRRAEP PHFFKVILQS TIENKMLRIP EKFVRRFGDE LFSVATLVVP EGGAWEVGLK 60 KDGRKIWFHD GWIDFVEFHS ICAGHFLVFE YRENSSFHVL IFDKSACEIE YPSIWKEPKN 120 EEQNSVHGNE MEREDSDECP SNRPSSKMNT PQLQKIQVKP SFGSALGTKR RQKCAMSLES 180 SKLKYGYMTR NRKSKMEETA EMDESRQGKL QGNEMCNSQG SLHHKRHLLR NAENLYASSS 240 LARKMDSKID GTKFKTARYN GGYERKESYE VEKHSSDDDD VKKTKLDELE LLAWLEDMEI 300 FVSGALSYLS VETKQTVIDA VRLFKPKNPS FIAIVRSKKT YSHYMYVPAK FADKYLRSDT 360 TAKFIKIQDS DGKEWPVRLR WSQWCGLKGG WRAFRKGMNL GGGDVCVFEL IMKKVIVLKF 420 SVLRASAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-16 | 309 | 426 | 27 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-16 | 309 | 426 | 27 | 143 | B3 domain-containing transcription factor VRN1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18536 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 2e-34 | B3 family protein |