PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9266_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 302aa    MW: 32970.8 Da    PI: 8.8035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9266_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10755347
                     SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                      W+ eE++ + +a++++  +     +W++Ia++++  +t +++k ++q +
    Neem_9266_f_1  7 TWSREEEKAFENAIAMHWIDedskeQWEKIASMVP-SKTVEELKQHYQLL 55
                     6*****************99***************.***********965 PP
2Myb_DNA-binding38.92e-12134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
    Neem_9266_f_1 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 178
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.593360IPR017884SANT domain
SMARTSM007171.7E-7458IPR001005SANT/Myb domain
PfamPF002491.5E-7754IPR001005SANT/Myb domain
CDDcd001671.47E-9756No hitNo description
Gene3DG3DSA:1.10.10.603.2E-5755IPR009057Homeodomain-like
SuperFamilySSF466891.0E-9862IPR009057Homeodomain-like
PROSITE profilePS5129417.282126183IPR017930Myb domain
SuperFamilySSF466897.18E-17129184IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-17131181IPR006447Myb domain, plants
SMARTSM007172.3E-10131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-11132177IPR009057Homeodomain-like
PfamPF002497.4E-11134178IPR001005SANT/Myb domain
CDDcd001671.03E-9134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSSSVVTWSR EEEKAFENAI AMHWIDEDSK EQWEKIASMV PSKTVEELKQ HYQLLVEDVH  60
AIDAGNIPLP DYVGQELATS SSKNFHGFSS TSATEKRSNG GYGSGFSGWS HESSGRGGKG  120
SSSRSDQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI  180
RLNSMNRDRR RSSIHDITSV NNGEVSSHQV PITGQHANTN PPSAAATATA MSMGGGSVKH  240
THRAQHHMPG FGMYGAPLGH PIAAPAQMAS AVGTPVMLPP PPHPPYVVPV AYPMAPPPSM  300
HQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-148721173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825411.11e-158PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN62e-87SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1R3IKC21e-162A0A1R3IKC2_9ROSI; Uncharacterized protein
STRINGEOY209391e-153(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-74MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]