PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_923_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 283aa    MW: 31711.4 Da    PI: 5.8807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_923_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.35.8e-141998170
           NAM  1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat 70
                  lppG+rF P++e+l ++yL++k + ++    l   + ike+d+y++eP +Lp+       +++++++wy +sk + k+++
  Neem_923_f_1 19 LPPGCRFYPSEEQLFHHYLTNKNTITEeessLCGYDLIKELDLYQYEPYELPEracyayGCRGRRRHWYCYSKVRVKKES 98
                  79*******************9776664455333468**************954666554445778******98887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-2012155IPR003441NAC domain
PROSITE profilePS5100511.40419155IPR003441NAC domain
PfamPF023653.1E-720111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEDSGSNSNS NNKTASFSLP PGCRFYPSEE QLFHHYLTNK NTITEEESSL CGYDLIKELD  60
LYQYEPYELP ERACYAYGCR GRRRHWYCYS KVRVKKESKL RTDWFMHEYA LVDHVKVNFC  120
VHAKLLHGSG LLSKFVGDKD DLQNASFVLC RVFIKSHRGN SISEVGLSSG AEESVSAVRH  180
IGIQHDGILK ADIVEAKVHD DNSFNRRNDT LRYLVGLVGQ PDDHSLSGPG SDADFHFPTG  240
IPPSEQISAS GLTGAGMFSD AVVARQLLSV LEEDFIELND LVP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040257.11e-83NAC domain-containing protein 96
TrEMBLA0A2H5NHA72e-79A0A2H5NHA7_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006473295.12e-81(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-14NAC domain containing protein 47