PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9164_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 186aa MW: 20702.5 Da PI: 8.3567

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9164_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.4	1.1e-28	75	162	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k +gkw+vtk+++eH+H+l+p Neem_9164_f_1 75 FYNTYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVGSGKWVVTKFVKEHTHPLTP 162 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.6E-26	75	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MVGNSIEACS RAGDGDQMCG TSVEIAFHED RDNKVDPDSL GQDTVPEGVP AVSLVSADEP 60 YVGQEFESEA AAHAFYNTYA TRVGFIIRVS KLSRSRRDGS AIGRALVCNK EGYRMPDKRE 120 KIVRQRAETR VGCRAMILVR KVGSGKWVVT KFVKEHTHPL TPGKGRKDCI YDQYPVSYCI 180 LFIYTF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015381173.1	1e-110	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SZL8	8e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067DXF7	1e-105	A0A067DXF7_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QLZ5	1e-105	A0A2H5QLZ5_CITUN; Uncharacterized protein
TrEMBL	V4TX02	1e-105	V4TX02_9ROSI; Uncharacterized protein
STRING	XP_006478716.1	1e-106	(Citrus sinensis)
STRING	XP_006443010.1	1e-106	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-75	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]