PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_915_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 644aa MW: 72822.5 Da PI: 6.516

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_915_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.1	2.1e-16	66	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF++ + + ++ k +g i++ +f Cs+e +++++ ++ C+a l++++++ gkw vtk+ ++HnH+++ Neem_915_f_4 66 FYDTYARRVGFTTHVGQFSRAKPDGPIITWDFACSREVFKRKNVES--------------CNAVLRIERKDPGKWIVTKFIEDHNHSMV 140 9*************************************999877..............************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	66	140	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.9E-11	358	391	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.991	358	394	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.3E-8	369	396	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MEVEGVDMDG EKGDERTATN AESDKSEKQN VTESSSEIEV INHDNDENFK PYVGMEFDSE 60 DAAKTFYDTY ARRVGFTTHV GQFSRAKPDG PIITWDFACS REVFKRKNVE SCNAVLRIER 120 KDPGKWIVTK FIEDHNHSMV TPNKVHYLRP RRHFAGAMKN VSEALELSGD VYISMDGNHV 180 SYESNRARNI SPVEPNLTGR NVGPDFESSW CFLLDKYDLQ KNEWLNAVYN ARKQWAPVYF 240 RGTFFAALSS NQGVSSFFDG YVNQQTTIPL FFKQYERALE NSIEKEIEAD YDTICMTPVL 300 KTPSPMEQQA AYLYPKKIFA KFQEELVETF VYTANKIEGD GMVSKYRVAK YEHDDKVYIV 360 TLNASEMKAS CSCQMFEYCG ILCRHILTVF TVSNVLTLPT HYILRRWTRN AKSWIGLDEL 420 KTDTQGIENL TLRFNRLCQE AIKYAEEGAM AVETYNAAIA ALREGGKKIL AAKKNVAKVS 480 PSGSQGAGNR HEDCSKKIPA SVPEMIPSLW PWQEAVPHSF NLNDSGVPVS DLNQPSMAPV 540 SIHHDCGNPD STVVLTCFKS MTWVIENKSS PSTGKVAVIN LKLQDYGKKP SGETEVQFRL 600 TRATLEPMIR SMAYISQQLL TPANKVAVIN LKASKVEFFF LSFF

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MEVEGVDMDG EKGDERTATN AESDKSEKQN VTESSSEIEV INHDNDENFK PYVGMEFDSE  60
DAAKTFYDTY ARRVGFTTHV GQFSRAKPDG PIITWDFACS REVFKRKNVE SCNAVLRIER  120
KDPGKWIVTK FIEDHNHSMV TPNKVHYLRP RRHFAGAMKN VSEALELSGD VYISMDGNHV  180
SYESNRARNI SPVEPNLTGR NVGPDFESSW CFLLDKYDLQ KNEWLNAVYN ARKQWAPVYF  240
RGTFFAALSS NQGVSSFFDG YVNQQTTIPL FFKQYERALE NSIEKEIEAD YDTICMTPVL  300
KTPSPMEQQA AYLYPKKIFA KFQEELVETF VYTANKIEGD GMVSKYRVAK YEHDDKVYIV  360
TLNASEMKAS CSCQMFEYCG ILCRHILTVF TVSNVLTLPT HYILRRWTRN AKSWIGLDEL  420
KTDTQGIENL TLRFNRLCQE AIKYAEEGAM AVETYNAAIA ALREGGKKIL AAKKNVAKVS  480
PSGSQGAGNR HEDCSKKIPA SVPEMIPSLW PWQEAVPHSF NLNDSGVPVS DLNQPSMAPV  540
SIHHDCGNPD STVVLTCFKS MTWVIENKSS PSTGKVAVIN LKLQDYGKKP SGETEVQFRL  600
TRATLEPMIR SMAYISQQLL TPANKVAVIN LKASKVEFFF LSFF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432553.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_006471345.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_006471347.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_024039846.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024039847.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024039848.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024952507.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_024952508.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	1e-176	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2P5RKE8	0.0	A0A2P5RKE8_GOSBA; Uncharacterized protein
STRING	XP_006471345.1	0.0	(Citrus sinensis)
STRING	XP_006432553.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-178	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]