PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8861_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 428aa    MW: 45729.5 Da    PI: 7.4038
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8861_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.42.4e-21324386163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+e+kr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e+++++ e+++l +e+
  Neem_8861_f_2 324 EREIKRQRRKQSNRESARRSRLRKQAECDELAQRAETLKEENANLRSEVNRIRSEYEQLLAEN 386
                    89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.8E-30196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.5E-25136198No hitNo description
PfamPF165961.7E-23211291No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-17317382No hitNo description
SMARTSM003381.4E-21324388IPR004827Basic-leucine zipper domain
PfamPF001701.2E-19324386IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.323326389IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.38E-11327383No hitNo description
CDDcd147022.13E-24329379No hitNo description
PROSITE patternPS000360331346IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGSSEVDKQA KEKEAKTPPA TTTQEQTPTT STGTVNPDWS GFQAYSPIPP HGFLASSPQA  60
PPYMWGVQHI MPPYGTPPHP YVAMYPHGGI YAHPSISPGS YPFSPFAMPS PNGIAEASGN  120
TPGNTEADGK PSDAKEKLPI KRSKGSLGSL NMITGKNNEL GKTSGASANG AYSKSAESAS  180
DGTSEGSDAN SQNGSTKEGG HLLIPYFKMK HGSQLKSGCR QDSMEGEASQ NGSTVHGPQN  240
GGSSTPHTMM NQPMAIMPMP ATGAPAAVPG PTTNLNIGMD YWGAPAATNI PAMRGKVPST  300
PVAGGMVTAG SRDNVQSQLW LQDEREIKRQ RRKQSNRESA RRSRLRKQAE CDELAQRAET  360
LKEENANLRS EVNRIRSEYE QLLAENASLK ERLGELPAQE DPRSVRNDQH LSNDTQQTGQ  420
SELVQGNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340346RRSRLRK
2340347RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432686.10.0bZIP transcription factor 16
RefseqXP_006471481.10.0bZIP transcription factor 16
RefseqXP_024039953.10.0bZIP transcription factor 16
RefseqXP_024039954.10.0bZIP transcription factor 16
RefseqXP_024952276.10.0bZIP transcription factor 16
RefseqXP_024952277.10.0bZIP transcription factor 16
SwissprotQ501B21e-171BZP16_ARATH; bZIP transcription factor 16
TrEMBLV4T8M80.0V4T8M8_9ROSI; Uncharacterized protein
STRINGXP_006471481.10.0(Citrus sinensis)
STRINGXP_006432686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-158basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]