PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8773_f_6

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

TCP

Protein Properties

Length: 357aa MW: 38199.4 Da PI: 5.9843

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8773_f_6	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.8	2.8e-36	79	151	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ Neem_8773_f_6 79 ATKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV 151 5799***********************************************************8877744421 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.512	84	138	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-29	84	161	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MESQRLGEVN DNDNEEQSNT SNNTNNFSAS ETSMMDPPES TVQMKEEELT DPENQEFDPS 60 SLPVGLVQVP IAPINRSLAT KRPSKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD 120 GETIRWLLEH AEPAIIEATG TGTVPAIAVS VNGALKIPTT SPAKPDGEEL PRKRRKRPCN 180 SEFIDINERN NQSSVSSGLA PITPMTTTTA AAYNNIGAAQ GLVPLWPMGA FMLQAQSGGV 240 HGTPGSNQAQ LWAIPAAATP LFNLQTRPIS SFVSATQSSG YQAQVQGEVH GSNVALGSTS 300 LPSSGSSGTS VSVNNSTSST TTTQMLRDFS LEIYDKKELH FLGRPAADQQ TATSSKP

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MESQRLGEVN DNDNEEQSNT SNNTNNFSAS ETSMMDPPES TVQMKEEELT DPENQEFDPS  60
SLPVGLVQVP IAPINRSLAT KRPSKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD  120
GETIRWLLEH AEPAIIEATG TGTVPAIAVS VNGALKIPTT SPAKPDGEEL PRKRRKRPCN  180
SEFIDINERN NQSSVSSGLA PITPMTTTTA AAYNNIGAAQ GLVPLWPMGA FMLQAQSGGV  240
HGTPGSNQAQ LWAIPAAATP LFNLQTRPIS SFVSATQSSG YQAQVQGEVH GSNVALGSTS  300
LPSSGSSGTS VSVNNSTSST TTTQMLRDFS LEIYDKKELH FLGRPAADQQ TATSSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	177	PRKRRKRP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006490294.1	1e-139	transcription factor TCP19
Swissprot	Q9LT89	2e-81	TCP19_ARATH; Transcription factor TCP19
TrEMBL	V4RLH2	1e-136	V4RLH2_9ROSI; Uncharacterized protein
STRING	XP_006490294.1	1e-139	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	6e-77	TCP family protein