PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8730_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 937aa MW: 107316 Da PI: 8.0197

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8730_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.1	7.9e-10	234	314	15	90
FAR1 15 rkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklk.vkkekdgkwevtkleleHnHela 90 r +k + s + g+ + tf+C + gk+++++k ++k+ r++ +++++C +lk k+++d+kw+++ ++ eHnH+++ Neem_8730_f_1 234 REEKRSDSGDRGQKARITFCCERGGKHRNTRKIkkdeRQKQLRNTGTKKCECPFTLKgYKLDDDDKWRLKVVSGEHNHKIV 314 555566667888999*********9988776443333333455666666666666234455*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-7	234	314	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-26	428	523	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MEMEAAKIHR RERTLVVMTL QRFLNRAGVL DEASKTFMEL QAAKSHQREP TEMTVQEFLN 60 QQVLVPEASK TPVELEAAKS NQREPTLCEM SLDDFLVRAG VVDEASQTPT ELQAAKSHQR 120 EPTEMTLQEF LNRAGVVSEA SKTAMQLETF EAEVANLRSF PLQMGLSPSL SVVPLSNPVI 180 SGRKRDADAI ENGTESMPRT KIKIRESGDK KQDYQNELGG KVSGSEEENL KFTREEKRSD 240 SGDRGQKARI TFCCERGGKH RNTRKIKKDE RQKQLRNTGT KKCECPFTLK GYKLDDDDKW 300 RLKVVSGEHN HKIVEHCEGR SYAGRLSKEE TSLSIHMSKN MVSPKDILAT LKHKDAENTS 360 TVKQIYNMRH RYKVIEMASR SQMQQLLSKL SEHKYIEWHE SFDGTDIIKD LFWAHPVSID 420 LMRAFPYVLL MDCTCKTNRS NLPLLEVIGV TSTNITFAIA FAYLESEQDD NYSWALERLR 480 SLMHDTVLPN VIISDGESAL MNAVERVFPT TKHLLCRRHI SMNLLTNCKK LFATNDVWKK 540 FRMSWDIMVL SSNEDEFVSH LDTLKQEFSS YPQAIEYVTN TWLNNYKERF VSAWTDKIMH 600 LGILTANRVG SSHSRLKKQL HSSQEIFETS WLKIHSLLML QRSDIITSFE KSLKAMPCKF 660 KSMEFEELQG FISIVALHIV YSELKRANVI GVDASICRCT IRRTHGLPCA HEIAEFKREG 720 RPIPLESMDI HWRKLDLAPV FKKQKVKLSC ESEFHRIAKH FNESDDDTKL LILKKLAEIV 780 DPQTKSLLEP ITKQETWDQP NSKVHASLHG DHPTCELVLS RQEKNCSLDS TVAPVVSTRP 840 IAERKEEDLR SEEKEHGNKR STFISSLPVK LQPYIYYIKD VAADGNCGFR AIADLVGYGE 900 NGWKQQSFTF LPLRSEPILA RKEIAIGFVN NNHFVEV

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MEMEAAKIHR RERTLVVMTL QRFLNRAGVL DEASKTFMEL QAAKSHQREP TEMTVQEFLN  60
QQVLVPEASK TPVELEAAKS NQREPTLCEM SLDDFLVRAG VVDEASQTPT ELQAAKSHQR  120
EPTEMTLQEF LNRAGVVSEA SKTAMQLETF EAEVANLRSF PLQMGLSPSL SVVPLSNPVI  180
SGRKRDADAI ENGTESMPRT KIKIRESGDK KQDYQNELGG KVSGSEEENL KFTREEKRSD  240
SGDRGQKARI TFCCERGGKH RNTRKIKKDE RQKQLRNTGT KKCECPFTLK GYKLDDDDKW  300
RLKVVSGEHN HKIVEHCEGR SYAGRLSKEE TSLSIHMSKN MVSPKDILAT LKHKDAENTS  360
TVKQIYNMRH RYKVIEMASR SQMQQLLSKL SEHKYIEWHE SFDGTDIIKD LFWAHPVSID  420
LMRAFPYVLL MDCTCKTNRS NLPLLEVIGV TSTNITFAIA FAYLESEQDD NYSWALERLR  480
SLMHDTVLPN VIISDGESAL MNAVERVFPT TKHLLCRRHI SMNLLTNCKK LFATNDVWKK  540
FRMSWDIMVL SSNEDEFVSH LDTLKQEFSS YPQAIEYVTN TWLNNYKERF VSAWTDKIMH  600
LGILTANRVG SSHSRLKKQL HSSQEIFETS WLKIHSLLML QRSDIITSFE KSLKAMPCKF  660
KSMEFEELQG FISIVALHIV YSELKRANVI GVDASICRCT IRRTHGLPCA HEIAEFKREG  720
RPIPLESMDI HWRKLDLAPV FKKQKVKLSC ESEFHRIAKH FNESDDDTKL LILKKLAEIV  780
DPQTKSLLEP ITKQETWDQP NSKVHASLHG DHPTCELVLS RQEKNCSLDS TVAPVVSTRP  840
IAERKEEDLR SEEKEHGNKR STFISSLPVK LQPYIYYIKD VAADGNCGFR AIADLVGYGE  900
NGWKQQSFTF LPLRSEPILA RKEIAIGFVN NNHFVEV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024038296.1	0.0	PKS-NRPS hybrid synthetase CHGG_01239-like
TrEMBL	A0A2R6QP95	0.0	A0A2R6QP95_ACTCH; PKS-NRPS hybrid synthetase
STRING	XP_006487130.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-14	FAR1-related sequence 11