PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_870_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 852aa MW: 94243.3 Da PI: 6.2737 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 265 | 285 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ff + G+C G++C+F H+ Neem_870_f_1 265 VCDFFTK-GWCIKGNSCRFLHV 285 7**9999.*************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.568 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 260 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 265 | 285 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-4 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 852 aa Download sequence Send to blast |
MSTLTTAAAA CADDDDEEII EVEEVDDLSD SPNDVAEDRS GSLDLCFLCG SQHMKLVDNL 60 VLFAIVVQDV SKEMESQGHK SHLESGSSTE DKSKARQPSN ALAVGESRVN FKSLGSSNEP 120 FTSQKELSHE NQEKSKYSKS RKLLSYAEDN GSQESEISKK DIGAFPQVKT HEERNELHTG 180 GKVHLCNTGI VDSETSSPSS VTKKNVTGGT WIRDRLDEGT SEEEIKPMGM HPGDDKQRMA 240 SRFSSPMIRT RSLSPADGNK RPAVVCDFFT KGWCIKGNSC RFLHVKDDTT NSTQLLEEDL 300 AAATVKTEVQ FNEGSRNETE RSKMACFPDP LALSVRNNVS FSSDLSSERE PPLQEVGENK 360 RLPQENHRPS FLQKENTSSD NSPSSQQLAS FRDDMGSILS YKEVGRESLR KNWPADDYGN 420 SASLKHRASS PIFKNNLLPE YRSSSSGSAT LSSNYHSRNP SSYPSSLEEQ PWIRSKCMRN 480 DYSSPFSSHS LNSSVGTADP TASSFSSHHI RAWTGSLLPF YSSSLNTSPL DAQKLLDSER 540 ESRNSKLSLF LRSTSLFPVS ELEKPGVSAD YKAKISSNDW EPSVPFRPSF FITPTSTSSS 600 RSQYDPLHDG LDSPTIGNVS LKVAFSSVGV STLNMSDQQL NGDSMLSKTM AMECNGDKSS 660 VSSHGRFNEN VLDKNCHTPR IDSYSDREEG VGTSIVDAQI STVPKEDDPS VSTCVKDISK 720 SKKINIDCNT RWENDGSRHD KGLKVDRVRQ KNVMDLEHKT DADVRKESKT AKHFRTGLVD 780 FVKELLKPTW CEGRLSKDAH NTIVKKAVDK VLSTLQPHQI PTNMESIKQY LSLSQPKIAK 840 LVEGYVDKYG KS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467754.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
Refseq | XP_006467755.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
Refseq | XP_024951114.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
Refseq | XP_024951115.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
TrEMBL | A0A067GDI0 | 0.0 | A0A067GDI0_CITSI; Uncharacterized protein | ||||
STRING | XP_006467754.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15617 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-55 | C3H family protein |