PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_8611_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | FAR1 | ||||||||
Protein Properties | Length: 229aa MW: 26156.4 Da PI: 7.0197 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.2 | 1.7e-20 | 63 | 156 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++G s+r++ ++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k + +w+vt + ++HnHel Neem_8611_f_1 63 EFYSEFAKRCGLSIRRHGTEGKdGVGKGLTRRYFVCHRAGNTPIKSSNENKPQRNRKSSRCGCQAYMRISKITelgAPEWRVTGFANNHNHELL 156 6*************9987766636677799******************9**********************99887889*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-17 | 63 | 156 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MMSDDAAQML MVYDDPSDQR SLSLDDTSST EESPDETRLS LDTSNDVVPY IGQRFPTHDA 60 AYEFYSEFAK RCGLSIRRHG TEGKDGVGKG LTRRYFVCHR AGNTPIKSSN ENKPQRNRKS 120 SRCGCQAYMR ISKITELGAP EWRVTGFANN HNHELLEPNR GRFLPAYRTI SETDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSI RKLDPEDES |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431499.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_006470984.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_006470985.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_015383462.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_015383463.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_024039994.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_024039995.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_024039996.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Refseq | XP_024952120.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 11 isoform X2 | ||||
Swissprot | Q9SY66 | 1e-138 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | V4UZ79 | 1e-159 | V4UZ79_9ROSI; Uncharacterized protein | ||||
STRING | XP_006470980.1 | 1e-159 | (Citrus sinensis) | ||||
STRING | XP_006431498.1 | 1e-159 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 1e-141 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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