PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_820_f_7
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 586aa    MW: 63497.5 Da    PI: 7.2791
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_820_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-32237294260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                   dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Neem_820_f_7 237 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSR-DGQITEIIYKGTHDHPK 294
                   8****************************************.***************85 PP
2WRKY106.21.7e-33400458159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Neem_820_f_7 400 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 458
                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-27232295IPR003657WRKY domain
SuperFamilySSF1182906.67E-25234295IPR003657WRKY domain
SMARTSM007741.1E-33236294IPR003657WRKY domain
PfamPF031062.2E-24237293IPR003657WRKY domain
PROSITE profilePS5081122.791237295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37385460IPR003657WRKY domain
SuperFamilySSF1182902.35E-29392460IPR003657WRKY domain
PROSITE profilePS5081138.825395460IPR003657WRKY domain
SMARTSM007743.1E-39400459IPR003657WRKY domain
PfamPF031063.5E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDGTEVRAGY VADPTRGDSN IDAASATGGA RYKLMSPAKL PISRSPCITI PPGLSPTSFL  60
ESPVLLSNVK IVGVLDSLCL SAKCWKVEEN GAEPSPTTGS FIKPQRLHVS VGSSAYTATT  120
VCSNTLNKRE SSCFEFRPHS ISNMVPADLN QQRSEQYVQT QGYGQTQSYT SSPTIKSEMA  180
VSSNELSLSA PLQMATSGAT VPADVDSDEP KQVVHPSTGI QASQSDHKGS GSSMPSDDGY  240
NWRKYGQKHV KGSEFPRSYY KCTHPNCEVK KLFERSRDGQ ITEIIYKGTH DHPKPQPNRR  300
YSAGTIMSLQ EERSDKVSSL AGRDGSMYGR MSHTMEPNGT PDLSPVTAND DSAEVGEGDD  360
DDPFSKRRKM DALVADVTPV VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP  420
RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP TARTSGHDGA AGPPAGNGTP  480
RIVSEESETI SLDLGVGISS ATENRSNEQP QALHSELVQS QLHASSSSYK IIQATPVATY  540
YGVLNGGMHQ YGSRENPSEG RGINIPPLNH SSYPYPQNIG RILTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36237460877Probable WRKY transcription factor 4
2lex_A2e-36237460877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276075e-64KT827607.1 Manihot esculenta WRKY transcription factor 32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452515.10.0probable WRKY transcription factor 20
RefseqXP_006474948.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2H5PR580.0A0A2H5PR58_CITUN; Uncharacterized protein
STRINGXP_006474948.10.0(Citrus sinensis)
STRINGXP_006452515.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein