PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7950_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ZF-HD | ||||||||
Protein Properties | Length: 314aa MW: 34447.1 Da PI: 7.5693 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.8 | 1.3e-33 | 44 | 101 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + v YkeClkNhAaslGgha+DGCgEfmps++++ +++++kCaACgCHRnFHRr++ Neem_7950_f_2 44 MVVSYKECLKNHAASLGGHALDGCGEFMPSPTATsDDPTSFKCAACGCHRNFHRRDPY 101 5789***************************999788******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.8E-28 | 46 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 46 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.997 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-30 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.66E-18 | 190 | 262 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 193 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-27 | 201 | 258 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDLTNLHTTK NPDTETESPP KILPSNSFSF TNGSFFHQPP PLQMVVSYKE CLKNHAASLG 60 GHALDGCGEF MPSPTATSDD PTSFKCAACG CHRNFHRRDP YEPTASNTHF LAPPPAAAAT 120 FQRSSSPSTD PSTAPSPETN SPQQQPVTSP APCSYFSSAP HMLLALSTGY TGPSDDHHYP 180 HPRRTGFNQV VGTKSENPCA RKRSRTKFTQ EQKEKMQSFA EKLGWKMNRA EEKLTLEFCS 240 EVGVSRRVFK VWMHNNKNAF GKKEFGNTTA PDINKNNDST VNGSSGVGFD INGFANNDKN 300 QNEESVLLSP KSEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-18 | 201 | 259 | 17 | 75 | ZF-HD homeobox family protein |
1wh7_A | 1e-18 | 202 | 259 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438687.1 | 1e-135 | zinc-finger homeodomain protein 11 | ||||
Refseq | XP_006483155.1 | 1e-135 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | Q9SEZ1 | 1e-73 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A067GT80 | 1e-134 | A0A067GT80_CITSI; Uncharacterized protein | ||||
STRING | XP_006483155.1 | 1e-134 | (Citrus sinensis) | ||||
STRING | XP_006438687.1 | 1e-134 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-72 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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