PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7709_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 316aa MW: 36335.4 Da PI: 8.4688 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.9 | 3.3e-17 | 12 | 103 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv + s++l+ + l++p kf++++gg+ s tl ++g +W+v l +k ++++++ ++W eFvk + + g f+vFk++++s+f +v + Neem_7709_f_3 12 FFKVIL-SSTLEDKKLRIPAKFVKKFGGE--LSAVATLSVPNGCVWRVGL--KKDGRKIWFHENWDEFVKYHSIGFGYFLVFKYVKNSTF--HVLI 100 666664.66666777***********988..8999***************..999999***************************99999..**** PP E-S CS B3 97 frk 99 f++ Neem_7709_f_3 101 FDT 103 997 PP | |||||||
2 | B3 | 41.5 | 2.3e-13 | 227 | 313 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ + +r++ p f ++ + + + ++l++ gr+ +k+ +rk+s++ + l+kGW eF k n++++gD+++F+l++r++ l+v+vf Neem_7709_f_3 227 NSRNYNRVYAPAAFG-KYVNRSVQ--FVKLQNACGRERLIKI-HRKSSNSdgFHLRKGWGEFSKNNNIQAGDICIFELIRRENVLLKVSVF 313 555667888888888.56433334..699************9.555555556****************************98888999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-24 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-24 | 10 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-21 | 11 | 102 | No hit | No description |
PROSITE profile | PS50863 | 12.534 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-15 | 12 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-17 | 12 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-13 | 214 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-13 | 215 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-11 | 218 | 313 | No hit | No description |
PROSITE profile | PS50863 | 11.265 | 219 | 316 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-4 | 220 | 316 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-11 | 226 | 313 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSNPLVHTSS HFFKVILSST LEDKKLRIPA KFVKKFGGEL SAVATLSVPN GCVWRVGLKK 60 DGRKIWFHEN WDEFVKYHSI GFGYFLVFKY VKNSTFHVLI FDTTACQIDY PSNQNDKQNS 120 AQQDEMENEK SVEILDSTAT HKRPISPVKK REPEGKECKM EETEEMDELN GVNDDDDDEL 180 VALLEEKGIC ITGRHYLCSS EERERAIEIA RLVKPKHPSF MIILGSNSRN YNRVYAPAAF 240 GKYVNRSVQF VKLQNACGRE RLIKIHRKSS NSDGFHLRKG WGEFSKNNNI QAGDICIFEL 300 IRRENVLLKV SVFHQL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479392.1 | 4e-86 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_024035724.1 | 4e-86 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_024035725.1 | 4e-86 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_024035726.1 | 4e-86 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
STRING | XP_006479392.1 | 2e-85 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 5e-33 | B3 family protein |