PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_761_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB

Protein Properties

Length: 244aa MW: 27301 Da PI: 8.9971

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_761_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.1	4.8e-19	40	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r+++ gR++k+c++rw + Neem_761_f_4 40 KGPWSAEEDRILTRLVERYGPRNWSLISRYIN-GRSGKSCRLRWCNQ 85 79****************************.*********985 PP
2	Myb_DNA-binding	54.1	3.5e-17	94	136	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Neem_761_f_4 94 PFSPSEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 136 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.72	35	90	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-31	38	133	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-17	39	88	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-18	40	85	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-25	41	93	IPR009057	Homeodomain-like
CDD	cd00167	8.07E-16	42	84	No hit	No description
SMART	SM00717	6.7E-15	91	139	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.044	92	141	IPR017930	Myb domain
CDD	cd00167	1.04E-11	94	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.8E-23	94	140	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-14	94	136	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEAINRCSSN STSSSDSSSS ESSFSGNRTA RTTQKAERIK GPWSAEEDRI LTRLVERYGP 60 RNWSLISRYI NGRSGKSCRL RWCNQLSPNV EHRPFSPSED ETILAAHARF GNRWATIARL 120 LPGRTDNAVK NHWNSTLKRR AREQQKHQQQ EQQLVESVDN GRNNSIGGFV SGSDHQHHQQ 180 QCMGLEDDAL TALTLGPPGS SSAGVTDKRS ESLPTGFWDV MRDVIAKEVR DFMSSSLPET 240 SGFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-41	37	141	1	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434842.1	1e-110	transcription factor MYB77
Refseq	XP_006473375.1	1e-110	transcription factor MYB77
TrEMBL	A0A067H9B1	1e-109	A0A067H9B1_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NGY9	1e-109	A0A2H5NGY9_CITUN; Uncharacterized protein
TrEMBL	V4T4G7	1e-109	V4T4G7_9ROSI; Uncharacterized protein
STRING	XP_006473375.1	1e-110	(Citrus sinensis)
STRING	XP_006434842.1	1e-110	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14553	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	2e-59	myb domain protein 77