PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7585_f_7
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 272aa    MW: 31603.5 Da    PI: 8.207
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7585_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.11.3e-4361382127
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                    ppGfrF Pt+eelv++yL++k+eg++      ++++i+ v+iy+++PwdLp+     ++ + ++w+fF++r++++a+g r+nr t++gyWkatg+ 
  Neem_7585_f_7   6 PPGFRFYPTEEELVSFYLHHKLEGRRedvnRVMDRIIPVVNIYDYNPWDLPQfseyLCHRDPEQWFFFIPRQENEARGGRPNRLTTAGYWKATGSP 101
                    9*************************6664333447999***********9646653344667********************************* PP

            NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      v+s +++++g k+t+vfy+grap+g+kt+W m+ey+
  Neem_7585_f_7 102 GFVYS-SNRAIGEKRTMVFYRGRAPNGTKTEWKMNEYK 138
                    *****.8899***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-483167IPR003441NAC domain
PROSITE profilePS5100548.1885167IPR003441NAC domain
PfamPF023651.9E-226138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVEEYPPGFR FYPTEEELVS FYLHHKLEGR REDVNRVMDR IIPVVNIYDY NPWDLPQFSE  60
YLCHRDPEQW FFFIPRQENE ARGGRPNRLT TAGYWKATGS PGFVYSSNRA IGEKRTMVFY  120
RGRAPNGTKT EWKMNEYKAI EGEASTYSTA GIPMVRPEFS VCRVYRKSKC LRAFDRRPPL  180
GVIISKPRAQ QVAHRSDHLL RHQEATSFDH QTIQMTSAVA ERTSSPKSPS SGDGHRSQPP  240
QTGESSNMVM TSTNESCWDW EQLDLFCELS KW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-34616816169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884559.11e-113NAC domain-containing protein 90-like
TrEMBLA0A067FWE81e-109A0A067FWE8_CITSI; Uncharacterized protein
TrEMBLA0A2H5MYF91e-109A0A2H5MYF9_CITUN; Uncharacterized protein
TrEMBLA0A2I4HD091e-109A0A2I4HD09_JUGRE; NAC domain-containing protein 90-like
TrEMBLV4UUN71e-109V4UUN7_9ROSI; Uncharacterized protein
STRINGXP_006481732.11e-110(Citrus sinensis)
STRINGXP_006430144.11e-110(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-71NAC domain containing protein 90