PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7585_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 262aa    MW: 30242.7 Da    PI: 7.1646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7585_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.41.1e-4361362128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    ppGfrF Pt+eelv++yL++k+eg +      ++++i+ v+iy+++PwdLp+  ++ + ++w+fF++r++++a+g r+nr t++gyWkatg    v
  Neem_7585_f_1   6 PPGFRFYPTEEELVSFYLRNKLEGGRedlnRLMDRIIPVVNIYDYNPWDLPQyLCHRDPEQWFFFIPRQENEARGGRPNRLTTAGYWKATGCPGIV 101
                    9************************966532233479**************524555677************************************ PP

            NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +s ++++vg k+t+vfy+grap+g+kt+W m+ey++
  Neem_7585_f_1 102 YS-SNRAVGEKRTMVFYRGRAPNGTKTEWKMNEYKV 136
                    99.8999***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-504164IPR003441NAC domain
PROSITE profilePS5100549.1425164IPR003441NAC domain
PfamPF023659.2E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAEEYPPGFR FYPTEEELVS FYLRNKLEGG REDLNRLMDR IIPVVNIYDY NPWDLPQYLC  60
HRDPEQWFFF IPRQENEARG GRPNRLTTAG YWKATGCPGI VYSSNRAVGE KRTMVFYRGR  120
APNGTKTEWK MNEYKVIEGE APTSTSSAPP VVRSEFSLCR VYKKSKCLRS FDRRPPPGVI  180
ISDPRAQRLT HHSDDHLHHQ AATSCDRQTP QRTAAERTSS RESSSSGDGH GGQPAQTGEN  240
SNIFMTLDNE PWWDWDQLDF LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-36616418165NO APICAL MERISTEM PROTEIN
1ut4_B3e-36616418165NO APICAL MERISTEM PROTEIN
1ut7_A3e-36616418165NO APICAL MERISTEM PROTEIN
1ut7_B3e-36616418165NO APICAL MERISTEM PROTEIN
4dul_A3e-36616418165NAC domain-containing protein 19
4dul_B3e-36616418165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022766085.11e-110NAC domain-containing protein 90-like
TrEMBLA0A061EV891e-107A0A061EV89_THECC; NAC domain containing protein 90
STRINGEOY083321e-108(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-68NAC domain containing protein 90